API for olivmrtn/MachineLearningGWAS
Machine Learning for Genome Wide Association Studies

Global functions
MDT Man page Source code
MDT-class Man page
MLGWAS Man page Source code
MLGWAS-class Man page
[,MDT,character,character,ANY-method Man page
[,MDT,character,missing,ANY-method Man page
[,MDT,missing,character,ANY-method Man page
[,MDT-method Man page
[,MLGWAS,character,ANY,ANY-method Man page
[,MLGWAS,logical,ANY,ANY-method Man page
[,MLGWAS,numeric,ANY,ANY-method Man page
[,MLGWAS-method Man page
aggregateMDT Man page
aggregateMDT,MDT-method Man page
annotateBioconductor Man page
annotateBioconductor,MDT-method Man page
annotateCoding Man page
annotateCoding,MDT-method Man page
annotateGOSim Man page
annotateLocation Man page
annotateLocation,MDT-method Man page
annotateMAF Man page
annotateMAF,MDT-method Man page
annotateMDT Man page
annotateRSID Man page
annotateRSID,MDT-method Man page
annotateStat Man page
annotateStat,MDT-method Man page
annotations Man page
annotations,MDT-method Man page
annotations<- Man page
annotations<-,MDT-method Man page
asMatrixMDT Man page
asMatrixMDT,MDT-method Man page
bindML Man page
bindML,MLGWAS-method Man page
changeLevels Source code
checkValidityMDT Source code
checkValidityMLGWAS Source code
chooseLapply Source code
chrAsCharacter Man page Source code
chrAsNumeric Man page Source code
classifierNames Man page
classifierNames,MLGWAS-method Man page
classifierNames<- Man page
classifierNames<-,MLGWAS-method Man page
classifiers Man page
classifiers,MLGWAS-method Man page
classifiers<- Man page
classifiers<-,MLGWAS-method Man page
compareFeatimp Man page
dim,MDT-method Man page
dim,MLGWAS-method Man page
errors Man page
errors,MLGWAS-method Man page
errors<- Man page
errors<-,MLGWAS-method Man page
featimp Man page
featimp,MLGWAS-method Man page
featimp<- Man page
featimp<-,MLGWAS-method Man page
features Man page
features,MDT-method Man page
features,MLGWAS-method Man page
features<- Man page
features<-,MDT-method Man page
features<-,MLGWAS-method Man page
fillMDT Man page
fillMDT,MDT-method Man page
filterMDT Man page
filterMDT,MDT-method Man page
fixGT Source code
gtToNum Source code
importPhenotype Man page
importPhenotype,MDT-method Man page
info Man page
info,MDT-method Man page
info<- Man page
info<-,MDT-method Man page
length,MDT-method Man page
length,MLGWAS-method Man page
makeXDf Source code
manhattanPlot Man page
manhattanPlot,MDT,ANY-method Man page
manhattanPlot,MDT,MLGWAS-method Man page
manhattanPlotSupport Source code
mdtToGRanges Man page
mdtToGRanges,MDT-method Man page
merge,MDT,data.frame-method Man page
merge,MDT-method Man page
merge-MDT-data.frame-method Man page
mergeDT Source code
mtable Man page
mtable,MDT-method Man page
mtable<- Man page
mtable<-,MDT-method Man page
ncol,MDT-method Man page
ncol,MLGWAS-method Man page
nrow,MDT-method Man page
nrow,MLGWAS-method Man page
parseGenomicLocations Source code
partitionNames Man page
partitionNames,MLGWAS-method Man page
partitionNames<- Man page
partitionNames<-,MLGWAS-method Man page
partitions Man page
partitions,MLGWAS-method Man page
partitions<- Man page
partitions<-,MLGWAS-method Man page
performances Man page
performances,MLGWAS-method Man page
performances<- Man page
performances<-,MLGWAS-method Man page
phenotype Man page
phenotype,MDT-method Man page
phenotype<- Man page
phenotype<-,MDT-method Man page
plotErrors Man page
plotErrors,MLGWAS-method Man page
plotFeatimp Man page
plotFeatimp,MLGWAS-method Man page
plotMDT Man page
plotMDT,MDT-method Man page
plotMLGWAS Man page
plotPerf Man page
plotPerf,MLGWAS-method Man page
pn Source code
predictions Man page
predictions,MLGWAS-method Man page
predictions<- Man page
predictions<-,MLGWAS-method Man page
printMLGWAS Source code
readVcfDir Man page Source code
response Man page
response,MDT-method Man page
response<- Man page
response<-,MDT-method Man page
reverseList Source code
samples Man page
samples,MDT-method Man page
samples,MLGWAS-method Man page
samples<- Man page
samples<-,MDT-method Man page
samples<-,MLGWAS-method Man page
selectMDT Man page
selectMDT,MDT-method Man page
show,MDT-method Man page
show,MLGWAS-method Man page
simulateData Source code
summaryErrors Man page
summaryErrors,MLGWAS-method Man page
summaryFeatimp Man page
summaryFeatimp,MLGWAS-method Man page
summaryMLGWAS Man page
summaryPerf Man page
summaryPerf,MLGWAS-method Man page
trainClassifier Man page
trainClassifier,MDT-method Man page
trainClassifierSupport Source code
trainClassifiers Man page
trainClassifiers,MDT,data.frame-method Man page
vcfsToMDT Man page
vcfsToMDT,list-method Man page
olivmrtn/MachineLearningGWAS documentation built on May 23, 2017, 7:14 p.m.