Description Usage Arguments Details Value See Also
Convert a list
of
VCF
objects, each representing an individual
patient, into a MDT
object.
1 2 3 4 |
vcfs |
List of |
fill |
Value for entries absent in VCF file. By default, sets to "0/0" corresponding to homozygote for REF allele. |
verbose |
|
Please note that chromosome X, Y, XY and M/MT are replaced by integers
23, 24, 25 and 26. All other chromosome names are replaced by 99.
Please use importPhenotype
to fill in phenotype
slot.
MDT
object with phenotype
slot.
VCF
readVcf
readVcfDir
importPhenotype
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