cmd.haircut.check.alignment | Check the raw/cut/ref alignment |
cmd.haircut.pipeline | Command line generator to run the Haircut pipeline |
cmdwrap.align.contigs.with.ref | Align cut and raw contigs to set of references |
haircut.get.training.contigs | Generate curated contigs that are used for training |
haircutwrap.get.call.for.PNG_ID | Call 10bp chunks of cut/raw contigs with the same PANGEA_ID |
haircutwrap.get.cut.statistics | Compute descriptive statistics that are used to calculate the... |
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