|cmd.haircut.check.alignment||Check the raw/cut/ref alignment|
|cmd.haircut.pipeline||Command line generator to run the Haircut pipeline|
|cmdwrap.align.contigs.with.ref||Align cut and raw contigs to set of references|
|haircut.get.training.contigs||Generate curated contigs that are used for training|
|haircutwrap.get.call.for.PNG_ID||Call 10bp chunks of cut/raw contigs with the same PANGEA_ID|
|haircutwrap.get.cut.statistics||Compute descriptive statistics that are used to calculate the...|
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