cmd.haircut.check.alignment: Check the raw/cut/ref alignment
In olli0601/PANGEAhaircut: abc.star
Description
Check the raw/cut/ref alignment
Usage
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cmd.haircut.check.alignment(indir, outdir, batch.n = NA, batch.id = NA,
prog = PR.HAIRCUT.CHCKAL)
Examples
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#
# run from command line
# this produces a command line string that can be run in UNIX alikes
#
## Not run:
#DATA <- SET THIS DIRECTORY
ind <- paste(DATA, 'contigs_150408_wref', sep='/' )
cat(cmd.haircut.check.alignment(indir, indir))
## End(Not run)
olli0601/PANGEAhaircut documentation built on May 24, 2019, 12:52 p.m.
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Description
Check the raw/cut/ref alignment
Usage
1 2 | cmd.haircut.check.alignment(indir, outdir, batch.n = NA, batch.id = NA,
prog = PR.HAIRCUT.CHCKAL)
|
Examples
1 2 3 4 5 6 7 8 9 10 11 | #
# run from command line
# this produces a command line string that can be run in UNIX alikes
#
## Not run:
#DATA <- SET THIS DIRECTORY
ind <- paste(DATA, 'contigs_150408_wref', sep='/' )
cat(cmd.haircut.check.alignment(indir, indir))
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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