API for olli0601/PANGEAhaircut
abc.star
| Global functions | |
|---|---|
| cmd.add.tag.to.fasta.names | Source code |
| cmd.align.contigs.with.ref | Source code |
| cmd.flatten.contigs | Source code |
| cmd.haircut.call | Source code |
| cmd.haircut.check.alignment | Man page Source code |
| cmd.haircut.cutstat | Source code |
| cmd.haircut.pipeline | Man page Source code |
| cmd.haircut.pipeline.dir | Source code |
| cmd.haircut.pipeline.file | Source code |
| cmd.hpccaller | Source code |
| cmd.hpcsys | Source code |
| cmd.hpcwrapper | Source code |
| cmd.various | Source code |
| cmdwrap.align.contigs.with.ref | Man page Source code |
| cmdwrap.align.contigs.with.ref.file | Source code |
| cmdwrap.flatten.contigs | Source code |
| dev.AC.data | Source code |
| dev.align.haircutcontigs | Source code |
| dev.haircut | Source code |
| haircut.QC.align.curated | Source code |
| haircut.QC.align.curated.automated | Source code |
| haircut.QC.divergence.curated.automated | Source code |
| haircut.QC.flatten.automated | Source code |
| haircut.QC.flatten.curated | Source code |
| haircut.QC.rmLTR.curated | Source code |
| haircut.calculate.offset | Source code |
| haircut.find.lastRefSite | Source code |
| haircut.find.nonLTRstart | Source code |
| haircut.get.call.for.PNG_ID | Source code |
| haircut.get.call.for.PNG_ID.150811 | Source code |
| haircut.get.call.for.PNG_ID.150814 | Source code |
| haircut.get.call.for.PNG_ID.150816 | Source code |
| haircut.get.curated.contigs | Source code |
| haircut.get.cut.statistics | Source code |
| haircut.get.cut.statistics.v150811 | Source code |
| haircut.get.fitted.model.150816a | Source code |
| haircut.get.frequencies | Source code |
| haircut.get.subset.among.raw.and.cut.contigs | Source code |
| haircut.get.training.contigs | Man page Source code |
| haircut.get.training.data | Source code |
| haircut.large.regexpr | Source code |
| haircut.load.training.data | Source code |
| haircutwrap.get.call.for.PNG_ID | Man page Source code |
| haircutwrap.get.cut.statistics | Man page Source code |
| haircutwrap.get.subset.among.raw.and.cut.contigs | Source code |
| seq.rmgaps | Source code |
