API for olli0601/PANGEAhaircut
abc.star

Global functions
cmd.add.tag.to.fasta.names Source code
cmd.align.contigs.with.ref Source code
cmd.flatten.contigs Source code
cmd.haircut.call Source code
cmd.haircut.check.alignment Man page Source code
cmd.haircut.cutstat Source code
cmd.haircut.pipeline Man page Source code
cmd.haircut.pipeline.dir Source code
cmd.haircut.pipeline.file Source code
cmd.hpccaller Source code
cmd.hpcsys Source code
cmd.hpcwrapper Source code
cmd.various Source code
cmdwrap.align.contigs.with.ref Man page Source code
cmdwrap.align.contigs.with.ref.file Source code
cmdwrap.flatten.contigs Source code
dev.AC.data Source code
dev.align.haircutcontigs Source code
dev.haircut Source code
haircut.QC.align.curated Source code
haircut.QC.align.curated.automated Source code
haircut.QC.divergence.curated.automated Source code
haircut.QC.flatten.automated Source code
haircut.QC.flatten.curated Source code
haircut.QC.rmLTR.curated Source code
haircut.calculate.offset Source code
haircut.find.lastRefSite Source code
haircut.find.nonLTRstart Source code
haircut.get.call.for.PNG_ID Source code
haircut.get.call.for.PNG_ID.150811 Source code
haircut.get.call.for.PNG_ID.150814 Source code
haircut.get.call.for.PNG_ID.150816 Source code
haircut.get.consensus.from.frequencies Source code
haircut.get.curated.contigs Source code
haircut.get.cut.statistics Source code
haircut.get.cut.statistics.v150811 Source code
haircut.get.fitted.model.150811a Source code
haircut.get.fitted.model.150816a Source code
haircut.get.fitted.model.150816b Source code
haircut.get.frequencies Source code
haircut.get.identical.among.raw.and.cut.contigs.v150811 Source code
haircut.get.subset.among.raw.and.cut.contigs Source code
haircut.get.training.contigs Man page Source code
haircut.get.training.contigs.byidentical.v150811 Source code
haircut.get.training.data Source code
haircut.getconsensus.v150811 Source code
haircut.large.regexpr Source code
haircut.load.training.data Source code
haircutprog.get.call.for.PNG_ID Source code
haircutwrap.get.call.for.PNG_ID Man page Source code
haircutwrap.get.call.for.PNG_ID.150811 Source code
haircutwrap.get.call.for.PNG_ID.150814 Source code
haircutwrap.get.call.for.PNG_ID.150816 Source code
haircutwrap.get.cut.statistics Man page Source code
haircutwrap.get.cut.statistics.v150811 Source code
haircutwrap.get.subset.among.raw.and.cut.contigs Source code
pipeline.various Source code
prog.haircut.150806 Source code
seq.find.pos.of.pattern Source code
seq.rmgaps Source code
olli0601/PANGEAhaircut documentation built on May 23, 2017, 7:15 p.m.