Man pages for ollyburren/rCOGS
Computes gene prioritisation scores based on promoter capture Hi-C data
| approx.bf.p | This function computes posterior probabilities for a variant... |
| compute_cogs | This function computes COGS scores for a given trait across a... |
| csnps.gr | csnps.gr Coding SNPs for chromosome 22. |
| digest.gr | digest.gr HindIII restriction digest for chromosome 22. |
| feature.sets | feature.sets Feature sets from Javierre et al pcHi-C dataset... |
| fix_chr | This function fixes chromosomes so they are numeric |
| ld.gr | ld.gr HapMap approx 1cM LD blocks for chromosome 22. |
| load_capture_design | This loads a capture design file with columns fragid and... |
| load_digest | This loads a restriction digest file with columns... |
| load_gwas | This function loads and checks set of univariate P values for... |
| load_ld_regions | This function checks and loads and checks a set of non... |
| load_ref_maf | This function checks and loads a reference set of maf expects... |
| logsum | helper function to sum logs without loss of precision... |
| maf.DT | maf.DT Reference minor allele frequencies from UK10K for... |
| make_csnps | This function loads in a coding SNPs matched to a given... |
| make_pchic | This function computes loads in a set of promoter capture... |
| make_vprom | This function computes 'Virtual' promoter regions. These are... |
| t1d.DT | t1d.DT GWAS data from Cooper et al. for Type 1 diabetes for... |
| Var.data | helper function to compute shrinkage factor for a... |
| Var.data.cc | helper function to compute shrinkage factor for a... |
