make_vprom: This function computes 'Virtual' promoter regions. These are...
In ollyburren/rCOGS: Computes gene prioritisation scores based on promoter capture Hi-C data
Description
Usage
Arguments
Value
Description
This function computes 'Virtual' promoter regions. These are baited fragments and the fragments either side.
Usage
1
make_vprom(f.digest, f.design, keep.ensg)
Arguments
f.digest
a scalar representing a file name of digest file
f.design
a scalar representing a file name of design file
keep.ensg
a vector of ensembl id's to include. If ommited then all ensembl ids regardless of further filtering are included
Value
data.table with two columns mapping ensg to virtual promoter fragment ids
ollyburren/rCOGS documentation built on Aug. 5, 2020, 2:13 p.m.
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Description Usage Arguments Value
Description
This function computes 'Virtual' promoter regions. These are baited fragments and the fragments either side.
Usage
1 | make_vprom(f.digest, f.design, keep.ensg)
|
Arguments
f.digest |
a scalar representing a file name of digest file |
f.design |
a scalar representing a file name of design file |
keep.ensg |
a vector of ensembl id's to include. If ommited then all ensembl ids regardless of further filtering are included |
Value
data.table with two columns mapping ensg to virtual promoter fragment ids
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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