approx.bf.p | This function computes posterior probabilities for a variant... |
compute_cogs | This function computes COGS scores for a given trait across a... |
csnps.gr | csnps.gr Coding SNPs for chromosome 22. |
digest.gr | digest.gr HindIII restriction digest for chromosome 22. |
feature.sets | feature.sets Feature sets from Javierre et al pcHi-C dataset... |
fix_chr | This function fixes chromosomes so they are numeric |
ld.gr | ld.gr HapMap approx 1cM LD blocks for chromosome 22. |
load_capture_design | This loads a capture design file with columns fragid and... |
load_digest | This loads a restriction digest file with columns... |
load_gwas | This function loads and checks set of univariate P values for... |
load_ld_regions | This function checks and loads and checks a set of non... |
load_ref_maf | This function checks and loads a reference set of maf expects... |
logsum | helper function to sum logs without loss of precision... |
maf.DT | maf.DT Reference minor allele frequencies from UK10K for... |
make_csnps | This function loads in a coding SNPs matched to a given... |
make_pchic | This function computes loads in a set of promoter capture... |
make_vprom | This function computes 'Virtual' promoter regions. These are... |
t1d.DT | t1d.DT GWAS data from Cooper et al. for Type 1 diabetes for... |
Var.data | helper function to compute shrinkage factor for a... |
Var.data.cc | helper function to compute shrinkage factor for a... |
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