Man pages for ollyburren/rCOGS
Computes gene prioritisation scores based on promoter capture Hi-C data

approx.bf.pThis function computes posterior probabilities for a variant...
compute_cogsThis function computes COGS scores for a given trait across a...
csnps.grcsnps.gr Coding SNPs for chromosome 22.
digest.grdigest.gr HindIII restriction digest for chromosome 22.
feature.setsfeature.sets Feature sets from Javierre et al pcHi-C dataset...
fix_chrThis function fixes chromosomes so they are numeric
ld.grld.gr HapMap approx 1cM LD blocks for chromosome 22.
load_capture_designThis loads a capture design file with columns fragid and...
load_digestThis loads a restriction digest file with columns...
load_gwasThis function loads and checks set of univariate P values for...
load_ld_regionsThis function checks and loads and checks a set of non...
load_ref_mafThis function checks and loads a reference set of maf expects...
logsumhelper function to sum logs without loss of precision...
maf.DTmaf.DT Reference minor allele frequencies from UK10K for...
make_csnpsThis function loads in a coding SNPs matched to a given...
make_pchicThis function computes loads in a set of promoter capture...
make_vpromThis function computes 'Virtual' promoter regions. These are...
t1d.DTt1d.DT GWAS data from Cooper et al. for Type 1 diabetes for...
Var.datahelper function to compute shrinkage factor for a...
Var.data.cchelper function to compute shrinkage factor for a...
ollyburren/rCOGS documentation built on Aug. 11, 2018, 4:13 p.m.