letterMatrix: Compute matrix of letters for the alignment
In omarwagih/siftr: generate SIFT scores directly in R
Description
Usage
Arguments
Value
Description
This takes all n sequences, of m positions and constructs
a matrix containing sequence amino acid x position
amino acids are represented as integers 1-20, 21 non-AA character
Usage
1
letterMatrix(aln, alphabet, npos)
Arguments
aln
alignment list of sequences
alphabet
character vector of alphabet (amino acids used)
npos
number of positions in the alignment
Value
matrix of amino acid indices for each sequence/position
omarwagih/siftr documentation built on May 24, 2019, 1:50 p.m.
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Description Usage Arguments Value
Description
This takes all n sequences, of m positions and constructs a matrix containing sequence amino acid x position amino acids are represented as integers 1-20, 21 non-AA character
Usage
1 | letterMatrix(aln, alphabet, npos)
|
Arguments
aln |
alignment list of sequences |
alphabet |
character vector of alphabet (amino acids used) |
npos |
number of positions in the alignment |
Value
matrix of amino acid indices for each sequence/position
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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