makePWM: Make PWM using pb weights and amino acid frequencies
In omarwagih/siftr: generate SIFT scores directly in R
Description
Usage
Arguments
Value
Description
Computes a weight matrix of 20 amino acids x n positions
Each cell is the frequency of the corresponding amino acid in that position * weight
Usage
1
makePWM(aln_mat, pb_weights, frq)
Arguments
aln_mat
alignment matrix generated from letterMatrix
pb_weights
weights computed from pbWeights function
frq
precomputed amino acid frequency in the proteome
Value
weight matrix of 20 amino acids x number of positions
omarwagih/siftr documentation built on May 24, 2019, 1:50 p.m.
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Description Usage Arguments Value
Description
Computes a weight matrix of 20 amino acids x n positions Each cell is the frequency of the corresponding amino acid in that position * weight
Usage
1 | makePWM(aln_mat, pb_weights, frq)
|
Arguments
aln_mat |
alignment matrix generated from letterMatrix |
pb_weights |
weights computed from pbWeights function |
frq |
precomputed amino acid frequency in the proteome |
Value
weight matrix of 20 amino acids x number of positions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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