download_sfaira: download a specific dataset from sfaira by an ID

In omnideconv/SimBu: Simulate Bulk RNA-seq Datasets from Single-Cell Datasets

download a specific dataset from sfaira by an ID

Description

download a specific dataset from sfaira by an ID

Usage

download_sfaira(
  setup_list,
  ids,
  force = FALSE,
  synapse_user = NULL,
  synapse_pw = NULL
)

Arguments

setup_list	the sfaira setup; given by setup_sfaira
ids	the IDs of the datasets
force	logical; TRUE if you want to force the download, even though no cell-type annotation exists for this dataset. Default if FALSE
synapse_user	character; username for synapse portal (https://www.synapse.org)
synapse_pw	character; password for synapse portal (https://www.synapse.org)

Value

matrix, gene names and cell IDs

omnideconv/SimBu documentation built on May 5, 2024, 12:33 p.m.