download_sfaira_multiple: download multiple datasets from sfaira using filters for...

In omnideconv/SimBu: Simulate Bulk RNA-seq Datasets from Single-Cell Datasets

download multiple datasets from sfaira using filters for organism, tissue and/or assay

Description

similar to the filters on the sfaira website (https://theislab.github.io/sfaira-portal/Datasets)

Usage

download_sfaira_multiple(
  setup_list,
  organisms = NULL,
  tissues = NULL,
  assays = NULL,
  force = FALSE
)

Arguments

setup_list	the sfaira setup; given by setup_sfaira
organisms	list of organisms (only human and mouse available)
tissues	list of tissues
assays	list of assays
force	logical; TRUE if you want to force to download all datasets, otherwise only the ones with cell-type annotation will be returned. Default if FALSE

Value

annotated data object, contains count matrix and annotation

omnideconv/SimBu documentation built on May 5, 2024, 12:33 p.m.