R/data.R

In ong8181/macam: A collection of miscellaneous R functions for ecology

#' Demo sample data used for phyloseq object
#'
#' @format A data frame with 36 rows and 14 variables:
#' @source \url{https://doi.org/10.1111/2041-210X.13204}
"sample_sheet"


#' Demo ASV table data used for phyloseq object
#'
#' @format A data frame with 36 rows and 358 variables:
#' @source \url{https://doi.org/10.1111/2041-210X.13204}
"asv_sheet"


#' Demo taxa table data used for phyloseq object
#'
#' @format A data frame with 358 rows and 13 variables:
#' @source \url{https://doi.org/10.1111/2041-210X.13204}
"tax_sheet"


#' Four fish species time series from Ushio et al. (2018)
#'
#' @format A data frame with 285 rows and 4 variables:
#' \describe{
#'   \item{Sebastes.inermis}{Japanese red seaperch}
#'   \item{Trachurus.japonicus}{Japanese jack mackerel}
#'   \item{Girella.punctata}{Largescale Blackfish}
#'   \item{Tridentiger.trigonocephalus}{The chameleon goby}
#' }
#' @source \url{https://doi.org/10.1038/nature25504}
"data_4sp"