othomantegazza/crossr: Functions For Cross Species Quantitative Transcriptomics

Functions that constitute a simple workflow for cross species transcriptomic comparison. The required input are expression matrix, we suggest to use TPM produced with a pseudoaligner, and orthogroups, we suggest orthofinder for orthogroups inference. The package implements a simple linear model based workflow in order to select genes that behave differently among species.

install.packages("remotes")
remotes::install_github("othomantegazza/crossr")