Files in outbreak-info/R-outbreak-info
outbreak.info R Client

.Rbuildignore

.github/workflows/pkgdown.yml

.github/workflows/testing-r-versions.yml

.gitignore

DESCRIPTION

NAMESPACE

R/authenticateUser.R R/epidemiologyDataDictionary.R R/genomicsDataDictionary.R R/getAdmn0.R R/getAdmn1ByCountry.R R/getAdmn2ByCountry.R R/getAdmn2ByState.R R/getAllLineagesByLocation.R R/getAuthToken.R R/getByAdmnLevel.R R/getCollectionDateByLocation.R R/getCountryByRegion.R R/getCumulativeBySubadmin.R R/getCuratedLineages.R R/getEpiData.R R/getGenomicData.R R/getGenomicsResponse.R R/getGlobalPrevalence.R R/getISO3.R R/getLag.R R/getLocationData.R R/getLocationIdGenomic.R R/getMetroByCountry.R R/getMutationAcrossLineage.R R/getMutationDetails.R R/getMutationsByLineage.R R/getPrevalence.R R/getResourcesData.R R/getResourcesResponse.R R/getSeqCounts.R R/getSubmissionDateByLocation.R R/lookupSublineages.R R/plotAllLineagesByLocation.R R/plotChoropleth.R R/plotEpiData.R R/plotMutationHeatmap.R R/plotPrevalenceDotPlot.R R/plotPrevalenceOverTime.R R/searchLocations.R R/setAuthToken.R R/zzz.R README.Rmd README.md

_pkgdown.yml

docs/404.html

docs/LICENSE-text.html

docs/LICENSE.html

docs/apple-touch-icon-120x120.png

docs/apple-touch-icon-152x152.png

docs/apple-touch-icon-180x180.png

docs/apple-touch-icon-60x60.png

docs/apple-touch-icon-76x76.png

docs/apple-touch-icon.png

docs/articles/epivignette.html

docs/articles/epivignette_files/accessible-code-block-0.0.1/empty-anchor.js

docs/articles/epivignette_files/anchor-sections-1.0/anchor-sections.css

docs/articles/epivignette_files/anchor-sections-1.0/anchor-sections.js

docs/articles/epivignette_files/figure-html/unnamed-chunk-25-1.png

docs/articles/index.html

docs/articles/lineagevignette.html

docs/articles/locationtracker.html

docs/articles/locationtracker_files/accessible-code-block-0.0.1/empty-anchor.js

docs/articles/locationtracker_files/anchor-sections-1.0/anchor-sections.css

docs/articles/locationtracker_files/anchor-sections-1.0/anchor-sections.js

docs/articles/locationtracker_files/figure-html/all_lineages_streamgraph-1.png

docs/articles/locationtracker_files/figure-html/all_lineages_streamgraph_overload-1.png

docs/articles/locationtracker_files/figure-html/cum_prev_by_state-1.png

docs/articles/locationtracker_files/figure-html/cum_prev_by_state-2.png

docs/articles/locationtracker_files/figure-html/custom_variants-1.png

docs/articles/locationtracker_files/figure-html/location_overlay-1.png

docs/articles/locationtracker_files/figure-html/mutation_heatmap-1.png

docs/articles/locationtracker_files/figure-html/pressure-1.png

docs/articles/locationtracker_files/figure-html/variant_overlay-1.png

docs/articles/locationtracker_files/figure-html/variant_overlay-2.png

docs/articles/locationvignette.html

docs/articles/outbreakinfo.html

docs/articles/outbreakinfo_files/accessible-code-block-0.0.1/empty-anchor.js

docs/articles/outbreakinfo_files/anchor-sections-1.0/anchor-sections.css

docs/articles/outbreakinfo_files/anchor-sections-1.0/anchor-sections.js

docs/articles/outbreakinfo_files/figure-html/characteristic_mutations-1.png

docs/articles/outbreakinfo_files/figure-html/epi-1.png

docs/articles/outbreakinfo_files/figure-html/prev-time-1.png

docs/articles/outbreakinfo_files/figure-html/unnamed-chunk-1-1.png

docs/articles/outbreakinfo_files/figure-html/unnamed-chunk-1-2.png

docs/articles/outbreakvignette.html

docs/articles/researchlibrary.html

docs/articles/researchlibrary_files/accessible-code-block-0.0.1/empty-anchor.js

docs/articles/researchlibrary_files/anchor-sections-1.0/anchor-sections.css

docs/articles/researchlibrary_files/anchor-sections-1.0/anchor-sections.js

docs/articles/researchlibrary_files/figure-html/resources_by_date-1.png

docs/articles/researchlibrary_files/figure-html/resources_by_type_source-1.png

docs/articles/researchlibrary_files/figure-html/unnamed-chunk-1-1.png

docs/articles/researchlibrary_files/figure-html/unnamed-chunk-1-2.png

docs/articles/varianttracker.html

docs/articles/varianttracker_files/accessible-code-block-0.0.1/empty-anchor.js

docs/articles/varianttracker_files/anchor-sections-1.0/anchor-sections.css

docs/articles/varianttracker_files/anchor-sections-1.0/anchor-sections.js

docs/articles/varianttracker_files/figure-html/all_gamma_mutations-1.png

docs/articles/varianttracker_files/figure-html/characteristic_mutations-1.png

docs/articles/varianttracker_files/figure-html/mutation_queries-1.png

docs/articles/varianttracker_files/figure-html/p1-1.png

docs/articles/varianttracker_files/figure-html/p1_comparison-1.png

docs/articles/varianttracker_files/figure-html/p1_comparison-2.png

docs/articles/varianttracker_files/figure-html/unnamed-chunk-1-1.png

docs/articles/varianttracker_files/figure-html/unnamed-chunk-2-1.png

docs/articles/varianttracker_files/figure-html/world_choropleth-1.png

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/extra.css

docs/favicon-16x16.png

docs/favicon-32x32.png

docs/favicon.ico

docs/index.html

docs/lineagevignette.Rmd

docs/link.svg

docs/locationtracker.html

docs/locationvignette.Rmd

docs/logo.png

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/OUTBREAK_INFO_AUTH.html

docs/reference/Rplot001.png

docs/reference/Rplot002.png

docs/reference/Rplot003.png

docs/reference/authenticateUser.html

docs/reference/convert_list_to_dataframe.html

docs/reference/epidemiologyDataDictionary.html

docs/reference/figures/daily_cases-1.png

docs/reference/figures/lineage_comparison-1.png

docs/reference/figures/location_tracker-1.png

docs/reference/figures/logo.png

docs/reference/figures/resources_by_date-1.png

docs/reference/figures/variant_tracker-1.png

docs/reference/genomicsDataDictionary.html

docs/reference/getAdmn0.html

docs/reference/getAdmn1ByCountry.html

docs/reference/getAdmn2ByCountry.html

docs/reference/getAdmn2ByState.html

docs/reference/getAllLineagesByLocation.html

docs/reference/getByAdmnLevel.html

docs/reference/getCollectionDateByLocation.html

docs/reference/getCountryByRegion.html

docs/reference/getCumulativeBySubadmin.html

docs/reference/getCuratedLineages.html

docs/reference/getEpiData.html

docs/reference/getGenomicData.html

docs/reference/getGenomicsResponse.html

docs/reference/getGlobalPrevalence.html

docs/reference/getISO3.html

docs/reference/getISO3_genomic.html

docs/reference/getLag.html

docs/reference/getLocationData.html

docs/reference/getLocationID_genomic.html

docs/reference/getMetroByCountry.html

docs/reference/getMutationAcrossLineage.html

docs/reference/getMutationDetails.html

docs/reference/getMutationsByLineage.html

docs/reference/getPrevalence.html

docs/reference/getPrevalenceByLocation.html

docs/reference/getResourcesData.html

docs/reference/getResourcesResponse.html

docs/reference/getSeqCounts.html

docs/reference/getSubmissionDateByLocation.html

docs/reference/index.html

docs/reference/lookupSublineages.html

docs/reference/plotAllLineagesByLocation-1.png

docs/reference/plotAllLineagesByLocation.html

docs/reference/plotCovid-1.png

docs/reference/plotCovid.html

docs/reference/plotEpiData-1.png

docs/reference/plotEpiData.html

docs/reference/plotMutationHeatmap.html

docs/reference/plotPrevalenceByLocation-1.png

docs/reference/plotPrevalenceByLocation-2.png

docs/reference/plotPrevalenceByLocation.html

docs/reference/plotPrevalenceOverTime-1.png

docs/reference/plotPrevalenceOverTime-2.png

docs/reference/plotPrevalenceOverTime-3.png

docs/reference/plotPrevalenceOverTime.html

docs/reference/printAPIFields.html

docs/reference/searchLocations.html

man/authenticateUser.Rd

man/daily_cases-1.png

man/epidemiologyDataDictionary.Rd

man/figures/daily_cases-1.png

man/figures/lineage_comparison-1.png

man/figures/location_tracker-1.png

man/figures/logo.png

man/figures/resources_by_date-1.png

man/figures/variant_tracker-1.png

man/genomicsDataDictionary.Rd man/getAdmn0.Rd man/getAdmn1ByCountry.Rd man/getAdmn2ByCountry.Rd man/getAdmn2ByState.Rd man/getAllLineagesByLocation.Rd man/getByAdmnLevel.Rd man/getCollectionDateByLocation.Rd man/getCountryByRegion.Rd man/getCumulativeBySubadmin.Rd man/getCuratedLineages.Rd man/getEpiData.Rd man/getGenomicData.Rd man/getGenomicsResponse.Rd man/getGlobalPrevalence.Rd man/getISO3.Rd man/getLag.Rd man/getLocationData.Rd man/getLocationIdGenomic.Rd man/getMetroByCountry.Rd man/getMutationAcrossLineage.Rd man/getMutationDetails.Rd man/getMutationsByLineage.Rd man/getPrevalence.Rd man/getResourcesData.Rd man/getResourcesResponse.Rd man/getSeqCounts.Rd man/getSubmissionDateByLocation.Rd man/lookupSublineages.Rd man/plotAllLineagesByLocation.Rd man/plotChoropleth.Rd man/plotEpiData.Rd man/plotMutationHeatmap.Rd man/plotPrevalenceDotPlot.Rd man/plotPrevalenceOverTime.Rd man/searchLocations.Rd

outbreakinfo/R/getGenomicsResponse.R~

pkgdown/extra.css

pkgdown/favicon/apple-touch-icon-120x120.png

pkgdown/favicon/apple-touch-icon-152x152.png

pkgdown/favicon/apple-touch-icon-180x180.png

pkgdown/favicon/apple-touch-icon-60x60.png

pkgdown/favicon/apple-touch-icon-76x76.png

pkgdown/favicon/apple-touch-icon.png

pkgdown/favicon/favicon-16x16.png

pkgdown/favicon/favicon-32x32.png

pkgdown/favicon/favicon.ico

pkgdown_build.R tests/testthat.R tests/testthat/test-getISO3.R tests/testthat/test-plotCovid.R tests/testthat/test-searchLocations.R vignettes/epivignette.Rmd vignettes/locationtracker.Rmd vignettes/outbreakinfo.Rmd vignettes/researchlibrary.Rmd vignettes/varianttracker.Rmd

outbreak-info/R-outbreak-info documentation built on March 2, 2023, 9:58 a.m.

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

outbreak-info/R-outbreak-info
outbreak.info R Client

Files in outbreak-info/R-outbreak-info
outbreak.info R Client

R Package Documentation

Browse R Packages

We want your feedback!

outbreak-info/R-outbreak-info outbreak.info R Client

Files in outbreak-info/R-outbreak-info outbreak.info R Client

R Package Documentation

Browse R Packages

We want your feedback!

outbreak-info/R-outbreak-info
outbreak.info R Client

Files in outbreak-info/R-outbreak-info
outbreak.info R Client