getMutationsByLineage: Retrieve mutations by lineage
In outbreak-info/R-outbreak-info: outbreak.info R Client
View source: R/getMutationsByLineage.R
getMutationsByLineage R Documentation
Retrieve mutations by lineage
Description
Retrieve all mutations in a specified lineage above a threshold
Usage
getMutationsByLineage(pangolin_lineage, frequency = 0.75, logInfo = TRUE)
Arguments
pangolin_lineage
PANGO lineage name or vector
frequency
a number between 0 and 1 specifying the frequency threshold above which to return mutations (default=0.8)
logInfo
(optional) 'Boolean' (T/F), T logs helper messages during API calls.
Value
dataframe
Examples
p1 = getMutationsByLineage(pangolin_lineage="P.1", frequency=0.5)
outbreak-info/R-outbreak-info documentation built on March 2, 2023, 9:58 a.m.
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View source: R/getMutationsByLineage.R
| getMutationsByLineage | R Documentation |
Retrieve mutations by lineage
Description
Retrieve all mutations in a specified lineage above a threshold
Usage
getMutationsByLineage(pangolin_lineage, frequency = 0.75, logInfo = TRUE)
Arguments
pangolin_lineage |
PANGO lineage name or vector |
frequency |
a number between 0 and 1 specifying the frequency threshold above which to return mutations (default=0.8) |
logInfo |
(optional) 'Boolean' (T/F), T logs helper messages during API calls. |
Value
dataframe
Examples
p1 = getMutationsByLineage(pangolin_lineage="P.1", frequency=0.5)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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