getCuratedLineages: Lookup curated lineages from outbreak.info

View source: R/getCuratedLineages.R

getCuratedLineagesR Documentation

Lookup curated lineages from outbreak.info

Description

Retrieve a curated list of Variants of Concern, Variants of Interest, Variants Under Monitoring, and de-escalated variants maintained by the [outbreak.info team](https://outbreak.info/situation-reports)

Usage

getCuratedLineages()

Value

dataframe containing VOCs, VOIs, VUMs, and associated metadata.

Examples

curated = getCuratedLineages()
# Pull out the curated lineages which are WHO-desginated
curated[!is.na(curated$who_name),]
# Pull out the Variants of Concern
curated[curated$variantType == "Variant of Concern",]

outbreak-info/R-outbreak-info documentation built on March 2, 2023, 9:58 a.m.