getGlobalPrevalence: Retrieve global daily prevalence of a lineage
In outbreak-info/R-outbreak-info: outbreak.info R Client

getGlobalPrevalence

R Documentation

Retrieve global daily prevalence of a lineage

Retrieves the global daily prevalence of a PANGO lineage

getGlobalPrevalence(pangolin_lineage, mutations = NULL, cumulative = NULL)

`pangolin_lineage`	PANGO lineage name
`mutations`	(optional) a 'vector' of mutation(s)
`cumulative`	(optional) 'Boolean' (T/F), T returns cumulative global prevalence since first day of detection

dataframe

# B.1.1.7 lineage
b117 = getGlobalPrevalence(pangolin_lineage = "B.1.1.7", mutations = "S:E484K")
head(b117)

outbreak-info/R-outbreak-info documentation built on March 2, 2023, 9:58 a.m.

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