getGenomicData: Retrieve data from api.outbreak.info/genomics
In outbreak-info/R-outbreak-info: outbreak.info R Client
View source: R/getGenomicData.R
getGenomicData R Documentation
Retrieve data from api.outbreak.info/genomics
Description
Retrieves up-to-date COVID-19 genomic data from outbreak.info according to user specifications.
Usage
getGenomicData(
query_url,
location = NULL,
cumulative = NULL,
pangolin_lineage = NULL,
mutations = NULL,
ndays = NULL,
frequency = NULL,
subadmin = NULL,
other_threshold = NULL,
nday_threshold = NULL,
other_exclude = NULL,
logInfo = TRUE
)
Value
dataframe
Examples
uk_b117 = getGenomicData(query_url="prevalence-by-location", location="United Kingdom", pangolin_lineage = "B.1.1.7")
head(uk_b117)
outbreak-info/R-outbreak-info documentation built on March 2, 2023, 9:58 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/getGenomicData.R
| getGenomicData | R Documentation |
Retrieve data from api.outbreak.info/genomics
Description
Retrieves up-to-date COVID-19 genomic data from outbreak.info according to user specifications.
Usage
getGenomicData( query_url, location = NULL, cumulative = NULL, pangolin_lineage = NULL, mutations = NULL, ndays = NULL, frequency = NULL, subadmin = NULL, other_threshold = NULL, nday_threshold = NULL, other_exclude = NULL, logInfo = TRUE )
Value
dataframe
Examples
uk_b117 = getGenomicData(query_url="prevalence-by-location", location="United Kingdom", pangolin_lineage = "B.1.1.7") head(uk_b117)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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