systemSubmit: systemSubmit

In pablo-gar/rSubmitter: An interface between R and a SLURM cluster

Description

Internal function for the rSubmitter package Tries executing a command up to n times while the execution returns a non-zero exit status. Useful when trying to automatically submmit a job and the scheduler has problems, then this will try several times if submission fails for any reason

Usage

systemSubmit(command, n = 5, wait = 5, ignore.stdout = TRUE,
  ignore.stderr = F, intern = TRUE, stopIfFailed = TRUE, verbose = F,
  ...)

Arguments

command	Character - system command to execute
n	Integer - number of times to try executing command in case it returns a non-zero exit status
wait	Integer - time in seconds to wait before trying executing the command again
ignore.stdout	Logical - if TRUE it won't return the standard output of execution
ignore.stderr	Logical - if TRUE it won't return the standard error of execution
intern	Logical - see ?system
stopIfFailed	Logical, if TRUE throws error after all tries have failed, else throws a warning
...	to be passed to system()

Value

system return object - see ?system

pablo-gar/rSubmitter documentation built on Jan. 26, 2020, 2:08 a.m.