QTLwindows: Candidate windows identified by GWAS associated with...

In pablobio/GALLO: Genomic Annotation in Livestock for Positional Candidate LOci

Description

Data from a systematic review which evaluated 18 articles regarding genomw-wide association studies for male fertility traits in beef and dairy cattle

Usage

data(QTLwindows)

Format

A data frame with 50 rows and 8 variables:

• First.marker.in.the.window: First marker mapped in the candidate window

• Last.marker.in.the.window: Last marker mapped in the candidate window

• Trait: Trait associated

• CHR: Chromosome

• BP1: Chromosomal position in base pairs for the first marker mapped in the candidate window(bovine reference assembly UMD3.1)

• BP1: Chromosomal position in base pairs for the last marker mapped in the candidate window (bovine reference assembly UMD3.1)

• Breed: Breed used in the study

• Reference: Study which the markers were retrieved

References

Fonseca et al. (2018) Journal of Animal Science, Volume 96, Issue 12, December 2018, Pages 4978–4999. (PubMed)

Examples

data(QTLwindows)

pablobio/GALLO documentation built on March 11, 2021, 2:59 p.m.