sub_genes_windows: Sub-function to search genes around candidate markers
In pablobio/GALLO: Genomic Annotation in Livestock for Positional Candidate LOci
Description
Usage
Arguments
Value
View source: R/sub_genes_windows.R
Description
Takes a list of candidate markers and search for genes a determined interval
Usage
1
sub_genes_windows(chr_list, db_file, marker_file, nThreads = NULL, int = 0)
Arguments
chr_list
"Object with the chromosomes to be analyzed"
db_file
Data frame with the information from .gtf file
marker_file
Data frame with the information from the candidate regions file
nThreads
The number of threads to be used
int
The interval in base pair
Value
A dataframe with the genes or QTLs mapped within the specified intervals
pablobio/GALLO documentation built on March 11, 2021, 2:59 p.m.
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Description Usage Arguments Value
View source: R/sub_genes_windows.R
Description
Takes a list of candidate markers and search for genes a determined interval
Usage
1 | sub_genes_windows(chr_list, db_file, marker_file, nThreads = NULL, int = 0)
|
Arguments
chr_list |
"Object with the chromosomes to be analyzed" |
db_file |
Data frame with the information from .gtf file |
marker_file |
Data frame with the information from the candidate regions file |
nThreads |
The number of threads to be used |
int |
The interval in base pair |
Value
A dataframe with the genes or QTLs mapped within the specified intervals
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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