allBuildEnrichTable | Iterate 'buildEnrichTable' along the specified GO ontologies... |
allEquivTestSorensen | Iterate 'equivTestSorensen' along the specified GO ontologies... |
allHclustThreshold | Iterate 'hclustThreshold' along the specified GO ontologies... |
allOncoGeneLists | 7 gene lists possibly related with cancer |
allSorenThreshold | Iterate 'sorenThreshold' along the specified GO ontologies... |
allTabs | An example of an object of class "allTableList" resulting... |
allTabsBP.4 | An example of an object of class "tableList" resulting from a... |
boot.cancerEquivSorensen | An example of object of class "AllEquivSDhtest" resulting... |
boot.tStat | Studentized Sorensen-Dice dissimilarity statistic |
BP.4 | An example of an object of class "equivSDhtestList" resulting... |
buildEnrichTable | Creates a 2x2 enrichment contingency table from two gene... |
cancerEquivSorensen | An example of an object of class "AllEquivSDhtest" resulting... |
completeTable | Reformats and completes (if necessary) a 2x2 enrichment... |
dSorensen | Computation of the Sorensen-Dice dissimilarity |
duppSorensen | Upper limit of a one-sided confidence interval (0, dUpp] for... |
enrichedIn | This function builds a cross-tabulation of enriched (TRUE)... |
equivTestSorensen | Equivalence test based on the Sorensen-Dice dissimilarity |
getDissimilarity | Access to the estimated Sorensen-Dice dissimilarity in one or... |
getEffNboot | Access to the number of effective bootstrap replicates in one... |
getNboot | Access to the number of initially planned bootstrap... |
getPvalue | Access to the p-value of one or more equivalence test results |
getSE | Access to the estimated standard error of the sample... |
getTable | Access to the contingency table of mutual enrichment of one... |
getUpper | Access to the upper limit of the one-sided confidence... |
gosorensen | gosorensen: A package for making inference on gene lists... |
hclustThreshold | From a Sorensen-Dice threshold dissimilarity matrix, generate... |
nice2x2Table | Checks for validity data representing an enrichment... |
pbtGeneLists | 14 gene lists possibly related with kidney transplant... |
pruneClusts | Remove all NULL or unrepresentable as a dendrogram... |
seSorensen | Standard error of the sample Sorensen-Dice dissimilarity,... |
sorenThreshold | For a given level (2, 3, ...) in a GO ontology (BP, MF or... |
tab_atlas.sanger_BP3 | Cross-tabulation of enriched GO terms at level 3 of ontology... |
upgrade | Update the result of a Sorensen-Dice equivalence test. |
waldman_atlas.BP.4 | An example of an object of class "equivSDhtest" resulting... |
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