Man pages for pablof1988/goSorensen
Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)

allBuildEnrichTableIterate 'buildEnrichTable' along the specified GO ontologies...
allEquivTestSorensenIterate 'equivTestSorensen' along the specified GO ontologies...
allHclustThresholdIterate 'hclustThreshold' along the specified GO ontologies...
allOncoGeneLists7 gene lists possibly related with cancer
allSorenThresholdIterate 'sorenThreshold' along the specified GO ontologies...
allTabsAn example of an object of class "allTableList" resulting...
allTabsBP.4An example of an object of class "tableList" resulting from a...
boot.cancerEquivSorensenAn example of object of class "AllEquivSDhtest" resulting...
boot.tStatStudentized Sorensen-Dice dissimilarity statistic
BP.4An example of an object of class "equivSDhtestList" resulting...
buildEnrichTableCreates a 2x2 enrichment contingency table from two gene...
cancerEquivSorensenAn example of an object of class "AllEquivSDhtest" resulting...
completeTableReformats and completes (if necessary) a 2x2 enrichment...
dSorensenComputation of the Sorensen-Dice dissimilarity
duppSorensenUpper limit of a one-sided confidence interval (0, dUpp] for...
enrichedInThis function builds a cross-tabulation of enriched (TRUE)...
equivTestSorensenEquivalence test based on the Sorensen-Dice dissimilarity
getDissimilarityAccess to the estimated Sorensen-Dice dissimilarity in one or...
getEffNbootAccess to the number of effective bootstrap replicates in one...
getNbootAccess to the number of initially planned bootstrap...
getPvalueAccess to the p-value of one or more equivalence test results
getSEAccess to the estimated standard error of the sample...
getTableAccess to the contingency table of mutual enrichment of one...
getUpperAccess to the upper limit of the one-sided confidence...
gosorensengosorensen: A package for making inference on gene lists...
hclustThresholdFrom a Sorensen-Dice threshold dissimilarity matrix, generate...
nice2x2TableChecks for validity data representing an enrichment...
pbtGeneLists14 gene lists possibly related with kidney transplant...
pruneClustsRemove all NULL or unrepresentable as a dendrogram...
seSorensenStandard error of the sample Sorensen-Dice dissimilarity,...
sorenThresholdFor a given level (2, 3, ...) in a GO ontology (BP, MF or...
tab_atlas.sanger_BP3Cross-tabulation of enriched GO terms at level 3 of ontology...
upgradeUpdate the result of a Sorensen-Dice equivalence test.
waldman_atlas.BP.4An example of an object of class "equivSDhtest" resulting...
pablof1988/goSorensen documentation built on July 31, 2024, 10:26 p.m.