fullEnrichedInBP4: Example of the output produced by the function 'enrichedIn'....

In pablof1988/goSorensen: Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)

Example of the output produced by the function enrichedIn. It contains all the GO terms enriched or not-enriched in the lists of allOncoGeneLists, ontology BP, GO-Level 4.

Description

A matrix with columns representing the gene lists from allOncoGeneLists, and rows with GO terms in the BP ontology at GO-Level 4.

This matrix comprises logit values, with TRUE indicating that the associated GO term is enriched in the respective list, and FALSE indicating that the GO term is not enriched.

This matrix represents the output of the enrichedIn function with the argument onlyEnriched = FALSE. The rows of this matrix display all the GO terms involved in the BP ontology at GO-Level 4.

Usage

data(fullEnrichedInBP4)

Format

An object of class "matrix" "array"

Details

The attribute nTerms indicates the total number of GO terms evaluated in the BP ontology, GO-Level 4. For this particular case, nTerms matches with the number of rows of the matrix

Please, consider this object as an illustrative example only, which is valid exclusively for the allOncoGeneLists data contained in this package. Please note that gene lists, GO terms and Bioconductor may change over time. The current version of these results was generated with Bioconductor version 3.20.

pablof1988/goSorensen documentation built on Dec. 15, 2024, 12:01 p.m.