eqTest_all_BP4: Example of the output produced by the function...
In pablof1988/goSorensen: Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)
eqTest_all_BP4 R Documentation
Example of the output produced by the function equivTestSorensen. It contains all the possible equivalence tests for the lists from allOncoGeneLists at level 4 of ontology BP.
Description
From the seven lists contained in allOncoGeneLists, this object contains the 7(6)/2 = 21 possible outputs for the equivalence tests to compare all possible pairs of lists, using the normal asymptotic distribution.
Usage
data(eqTest_all_BP4)
Format
An exclusive object from goSorensen of the class "equivSDhtestList"
Details
The parameters considered to execute these tests are: irrelevance limit d0 = 0.4444 and confidence level conf.level = 0.95.
Consider this object only as an illustrative example, which is valid exclusively for the data allOncoGeneLists contained in this package. Note that gene lists, GO terms, and Bioconductor may change over time. The current version of these results were generated with Bioconductor version 3.20.
pablof1988/goSorensen documentation built on Dec. 15, 2024, 12:01 p.m.
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| eqTest_all_BP4 | R Documentation |
Example of the output produced by the function equivTestSorensen. It contains all the possible equivalence tests for the lists from allOncoGeneLists at level 4 of ontology BP.
Description
From the seven lists contained in allOncoGeneLists, this object contains the 7(6)/2 = 21 possible outputs for the equivalence tests to compare all possible pairs of lists, using the normal asymptotic distribution.
Usage
data(eqTest_all_BP4)
Format
An exclusive object from goSorensen of the class "equivSDhtestList"
Details
The parameters considered to execute these tests are: irrelevance limit d0 = 0.4444 and confidence level conf.level = 0.95.
Consider this object only as an illustrative example, which is valid exclusively for the data allOncoGeneLists contained in this package. Note that gene lists, GO terms, and Bioconductor may change over time. The current version of these results were generated with Bioconductor version 3.20.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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