cont_atlas.sanger_BP4: Example of the output produced by the function...
In pablof1988/goSorensen: Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)
cont_atlas.sanger_BP4 R Documentation
Example of the output produced by the function buildEnrichTable. It contains the enrichment contingency table for two lists at level 4 of ontology BP.
Description
A contingency 2x2 table with the number of joint enriched GO terms (TRUE-TRUE); the number of GO terms enriched only in one list but not in the other one (FALSE-TRUE and TRUE-FALSE); and the number of GO terms not enriched in either of the two lists.
Usage
data(cont_atlas.sanger_BP4)
Format
An object of class "table"
Details
Consider this object only as an illustrative example, which is valid exclusively for the lists atlas and sanger from the data allOncoGeneLists contained in this package. Note that gene lists, GO terms, and Bioconductor may change over time. The current version of these results were generated with Bioconductor version 3.20.
pablof1988/goSorensen documentation built on Dec. 15, 2024, 12:01 p.m.
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| cont_atlas.sanger_BP4 | R Documentation |
Example of the output produced by the function buildEnrichTable. It contains the enrichment contingency table for two lists at level 4 of ontology BP.
Description
A contingency 2x2 table with the number of joint enriched GO terms (TRUE-TRUE); the number of GO terms enriched only in one list but not in the other one (FALSE-TRUE and TRUE-FALSE); and the number of GO terms not enriched in either of the two lists.
Usage
data(cont_atlas.sanger_BP4)
Format
An object of class "table"
Details
Consider this object only as an illustrative example, which is valid exclusively for the lists atlas and sanger from the data allOncoGeneLists contained in this package. Note that gene lists, GO terms, and Bioconductor may change over time. The current version of these results were generated with Bioconductor version 3.20.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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