| allBuildEnrichTable | Iterate 'buildEnrichTable' along the specified GO ontologies... |
| allEquivTestSorensen | Iterate 'equivTestSorensen' along the specified GO ontologies... |
| allHclustThreshold | Iterate 'hclustThreshold' along the specified GO ontologies... |
| allOncoGeneLists | 7 gene lists possibly related with cancer |
| allSorenThreshold | Iterate 'sorenThreshold' along the specified GO ontologies... |
| allTabs | An example of an object of class "allTableList" resulting... |
| allTabsBP.4 | An example of an object of class "tableList" resulting from a... |
| boot.cancerEquivSorensen | An example of object of class "AllEquivSDhtest" resulting... |
| boot.tStat | Studentized Sorensen-Dice dissimilarity statistic |
| BP.4 | An example of an object of class "equivSDhtestList" resulting... |
| buildEnrichTable | Creates a 2x2 enrichment contingency table from two gene... |
| cancerEquivSorensen | An example of an object of class "AllEquivSDhtest" resulting... |
| completeTable | Reformats and completes (if necessary) an enrichment... |
| crossTabGOIDs | crossTabGOIDs |
| crossTabGOIDs4GeneLists | crossTab4GeneLists |
| crossTabGOIDsUnrestricted | crossTabGOIDsUnrestricted |
| dSorensen | Computation of the Sorensen-Dice dissimilarity |
| duppSorensen | Upper limit of a one-sided confidence interval (0, dUpp] for... |
| enrichOnto | enrichOnto |
| equivTestSorensen | Equivalence test based on the Sorensen-Dice dissimilarity |
| getDissimilarity | Access to the estimated Sorensen-Dice dissimilarity in one or... |
| getEffNboot | Access to the number of effective bootstrap replicates in one... |
| getNboot | Access to the number of initially planned bootstrap... |
| getPvalue | Access to the p-value of one or more equivalence test results |
| getSE | Access to the estimated standard error of the sample... |
| getTable | Access to the contingency table of mutual enrichment of one... |
| getUpper | Access to the upper limit of the one-sided confidence... |
| GOIDsInLevel | GOIDsInLevel |
| gosorensen | gosorensen: A package for making inference on gene lists... |
| hclustThreshold | From a Sorensen-Dice threshold dissimilarity matrix, generate... |
| humanEntrezIDs | Entrez Identifiers for all human genes contained in the... |
| nice2x2Table | Checks for validity data representing an enrichment... |
| pbtGeneLists | 5 gene lists possibly related with kidney transplant... |
| pruneClusts | Remove all NULL or unrepresentable as a dendrogram... |
| seSorensen | Standard error of the sample Sorensen-Dice dissimilarity,... |
| sorenThreshold | For a given level (2, 3, ...) in a GO ontology (BP, MF or... |
| tab_atlas.sanger_BP3 | Cross-tabulation of enriched GO items at level 3 of ontology... |
| upgrade | Update the result of a Sorensen-Dice equivalence test. |
| waldman_atlas.BP.4 | An example of an object of class "equivSDhtest" resulting... |
