changeSampleIDs: Change sample IDs

In pachterlab/SpatialFeatureExperiment: Integrating SpatialExperiment with Simple Features in sf

Change sample IDs

Description

Change sample IDs in all fields of the SFE object where sample IDs are present, not just the colData.

Usage

changeSampleIDs(sfe, replacement)

Arguments

sfe	A SpatialFeatureExperiment object.
replacement	A named character vector whose names are the existing sample IDs to be changed and whose values are the corresponding replacements.

Value

An SFE object.

Examples

library(SFEData)
sfe <- McKellarMuscleData(dataset = "small")
sfe <- changeSampleIDs(sfe, c(Vis5A = "sample01"))
sampleIDs(sfe)

pachterlab/SpatialFeatureExperiment documentation built on March 11, 2024, 11:11 p.m.