getTechTxFields | R Documentation |
Get column names for x, y, and z coordinates, gene IDs, and cell IDs from the transcript file and get file paths for transcript spot coordinates given technology.
getTechTxFields(tech, data_dir = NULL)
tech |
Name of the commercial technology, must be one of Vizgen, Xenium, and CosMX. |
data_dir |
Top level directory of the output. |
A named list with elements:
spatialCoordsNames
A character vector for column names for the xyz coordinates of the transcript spots.
gene_col
Column name for gene IDs.
cell_col
Column name for cell IDs.
fn
File path of the transcript spot file.
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