multi_listw2sparse: Convert multiple listw graphs into a single sparse adjacency...
In pachterlab/SpatialFeatureExperiment: Integrating SpatialExperiment with Simple Features in sf
multi_listw2sparse R Documentation
Convert multiple listw graphs into a single sparse adjacency matrix
Description
Each sample in the SFE object has a separate spatial neighborhood graph.
Spatial analyses performed jointly on multiple samples require a combined
spatial neighborhood graph from the different samples, where the different
samples would be disconnected components of the graph. This combined
adjacency matrix can be used in MULTISPATI PCA.
Usage
multi_listw2sparse(listws)
Arguments
listws
A list of listw objects.
Value
A sparse dgCMatrix of the combined spatial neighborhood graph,
with the original spatial neighborhood graphs of the samples on the diagonal.
When the input is an SFE object, the rows and columns will match the column
names of the SFE object.
Examples
# example code
pachterlab/SpatialFeatureExperiment documentation built on Dec. 20, 2024, 3:41 a.m.
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| multi_listw2sparse | R Documentation |
Convert multiple listw graphs into a single sparse adjacency matrix
Description
Each sample in the SFE object has a separate spatial neighborhood graph. Spatial analyses performed jointly on multiple samples require a combined spatial neighborhood graph from the different samples, where the different samples would be disconnected components of the graph. This combined adjacency matrix can be used in MULTISPATI PCA.
Usage
multi_listw2sparse(listws)
Arguments
listws |
A list of |
Value
A sparse dgCMatrix of the combined spatial neighborhood graph,
with the original spatial neighborhood graphs of the samples on the diagonal.
When the input is an SFE object, the rows and columns will match the column
names of the SFE object.
Examples
# example code
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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