pubs_per_cat: Number of publications per category
In pachterlab/museumst: Museum of Spatial Transcriptomics

pubs_per_cat

R Documentation

Number of publications per category

Description

I think it looks better when the bars are horizontal to make the category names easier to read, as the names can be quite long. This will plot a bar chart for the number of publications per category, sorted according to the number of publications.

Usage

pubs_per_cat(
  pubs,
  category,
  fill_by = NULL,
  n_top = NULL,
  isotype = FALSE,
  img_df = NULL,
  img_unit = NULL
)

Arguments

`pubs`	A data frame at least with a column for the category of interest.
`category`	Column name to plot. Tidyeval is supported. If it's species or language, then img_df does not have to be supplied for isotype plot since the images are supplied internally.
`fill_by`	Variable to fill the bars with if not plotting isotypes.
`n_top`	Number of top entries to plot. Especially useful for isotype.
`isotype`	Logical, whether to make isotype plot, like one icon stands for a certain number of publications.
`img_df`	A data frame with one column with the same name as 'category' and another column called 'image_paths' for path to the images. Relative path is fine since it will be internally converted to absolute path. This argument can be left as NULL if category is species or language, since in these two cases, the 'img_df' is provided internally.
`img_unit`	Integer, how many publications for one icon.

Details

These are the sources of images that are not stated to be under public domain found online with filter "free to share and use". No changes were made to the images unless indicated. The author and license, if found, are listed here as well.

drosophila.jpg: http://gompel.org/images-2/drosophilidae
zebrafish.jpg: https://thumbs.dreamstime.com/m/zebrafish-zebra-barb-danio-rerio-freshwater-aquarium-fish-isolated-white-background-50201849.jpg
ciona.jpg: http://www.habitas.org.uk/marinelife/tunicata/cioints.jpg
xenopus.jpg: https://en.wikipedia.org/wiki/African_clawed_frog#/media/File:Xenopus_laevis_02.jpg by Brian Gratwicke. License: https://creativecommons.org/licenses/by/2.0/
celegans.jpg: https://en.wikipedia.org/wiki/Caenorhabditis_elegans#/media/File:Adult_Caenorhabditis_elegans.jpg by Kbradnam at English Wikipedia. License: https://creativecommons.org/licenses/by-sa/2.5/ A smaller version of the original is used here.
arabidopsis.jpg: http://parts.igem.org/wiki/images/b/bd/Plants_Arabidopsis_thaliana_400px.jpg
skull.jpg: http://pngimg.com/download/42558 License: https://creativecommons.org/licenses/by-nc/4.0/ The original was compressed and converted to jpg here.
platynereis.jpg: https://en.wikipedia.org/wiki/Epitoky#/media/File:PlatynereisDumeriliiFemaleEpitoke.tif By Martin Gühmann. A smaller jpg version of the original is used here. License: https://creativecommons.org/licenses/by-sa/4.0/
yeast.jpg: https://en.wikipedia.org/wiki/Shmoo#/media/File:Shmoos_s_cerevisiae.jpg By Pilarbini. This is a smaller version of the original. License: https://creativecommons.org/licenses/by-sa/4.0/deed.en