plot_loadings: Plot Loadings and Interpretations
In pachterlab/zika: Tools for investigating RNA-Seq

Description Usage Arguments Value

give a principal component, tells you which contribute the most or give a sample, tells you which PC's it contributes to the most

1
2
3

plot_loadings(obj, use_filtered = TRUE, sample = NULL, pc_input = NULL,
  units = "est_counts", pc_count = NULL, scale = FALSE,
  pca_loading_abs = TRUE, ...)

`obj`	a `sleuth` object
`use_filtered`	if TRUE, use filtered data. otherwise, use all data
`sample`	user input on which sample and which PC's contribute the most
`units`	either 'est_counts' or 'tpm'
`pc_count`	# of PC's
`scale`	scale or not
`pca_loading_abs`	default true, to see all PC's magnitude (recommended)
`PC`	principal component to view sample's contribution to that PC