plot_transcript_heatmap: Plot clustered heatmap

In pachterlab/zika: Tools for investigating RNA-Seq

Description

Plot a clustered heatmap. The clustering is done by the hclust function.

Usage

plot_transcript_heatmap(obj, transcripts, units = "tpm", trans = "log",
  offset = 1)

Arguments

obj	a sleuth object
transcripts	a vector of strings containing a list of transcripts to be plotted in a heatmap
units	a string specifying which units to use, either tpm or est_counts
trans	a string specifying a function to transform the data by

Value

a ggplot object

pachterlab/zika documentation built on May 24, 2019, 5:58 p.m.