sleuth_to_matrix: Convert a sleuth object to matrix

In pachterlab/zika: Tools for investigating RNA-Seq

Description

Convert a sleuth object to a matrix with the condition names.

Usage

sleuth_to_matrix(obj, which_df, which_units)

Arguments

obj	a sleuth object
which_df	character vector of length one. Which type of data to use ("obs_norm" or "obs_raw")
which_units	character vector of length one. Which units to use ("tpm" or "est_counts")

Value

a list with an attribute 'data', which contains a matrix of target_ids and transcript expression in which_units

Examples

sleuth_matrix <- sleuth_to_matrix(sleuth_obj, 'obs_norm', 'tpm')
head(sleuth_matrix$data) # look at first 5 transcripts, sorted by name

pachterlab/zika documentation built on May 24, 2019, 5:58 p.m.