paoloinglese/SPUTNIK: SPatially aUTomatic deNoising for Ims toolKit

A set of tools for the peak filtering of mass spectrometry imaging data (MSI or IMS) based on spatial distribution of signal. Given a region-of-interest (ROI), representing the spatial region where the informative signal is expected to be localized, a series of filters determine which peak signals are characterized by an implausible spatial distribution. The filters reduce the dataset dimensionality and increase its information vs noise ratio, improving the quality of the unsupervised analysis results, reducing data dimensionality and simplifying the chemical interpretation.

Getting started

Package details

AuthorPaolo Inglese [aut, cre], Goncalo Correia [aut, ctb]
MaintainerPaolo Inglese <[email protected]>
LicenseGPL (>= 3)
Version1.1.1
URL https://github.com/paoloinglese/SPUTNIK
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("paoloinglese/SPUTNIK")
paoloinglese/SPUTNIK documentation built on Dec. 19, 2018, 11 a.m.