Files in paoloinglese/SPUTNIK
Spatially Automatic Denoising for Imaging Mass Spectrometry Toolkit
.Rbuildignore
.gitattributes
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/add_rem_border.R
R/binary_refimg.R
R/construct_funcs.R
R/continuous_refimg.R
R/data_funcs.R
R/examples/filter_count.R
R/examples/filter_csr.R
R/examples/filter_global.R
R/examples/filter_split.R
R/examples/graph_funcs.R
R/examples/msImage_binOtsu.R
R/examples/msImage_closeImage.R
R/examples/msImage_invertImage.R
R/examples/msImage_plot.R
R/examples/msImage_removeSmallObjects.R
R/examples/msImage_smoothImage.R
R/examples/msiDataset_binKmeans.R
R/examples/msiDataset_getters.R
R/examples/msiDataset_transform.R
R/examples/sparseness.R
R/filter_count.R
R/filter_csr.R
R/filter_global.R
R/filter_split.R
R/generic_funcs.R
R/graph_funcs.R
R/is_funcs.R
R/ms.image_class.R
R/ms.image_methods.R
R/msi.dataset_class.R
R/msi.dataset_funcs.R
R/msi.dataset_methods.R
R/mz_funcs.R
R/sparseness_funcs.R
README.md
SPUTNIK.Rproj
_config.yml
docs/_config.yml
docs/index.Rmd
docs/index.html
docs/refs.bib
docs/sputnik.svg
docs/sputnik_sticker.png
inst/CITATION
man/CSRPeaksFilter.Rd
man/NMI.Rd
man/PCAImage-msi.dataset-method.Rd
man/SSIM.Rd
man/applyPeaksFilter-msi.dataset-method.Rd
man/binKmeans-msi.dataset-method.Rd
man/binKmeans2-msi.dataset-method.Rd
man/binOtsu-ms.image-method.Rd
man/binSupervised-msi.dataset-method.Rd
man/bladderMALDIRompp2010.Rd
man/closeImage-ms.image-method.Rd
man/countPixelsFilter.Rd
man/createPeaksFilter.Rd
man/getIntensityMat-msi.dataset-method.Rd
man/getMZ-msi.dataset-method.Rd
man/getShapeMSI-msi.dataset-method.Rd
man/gini.index.Rd
man/globalPeaksFilter.Rd
man/invertImage-ms.image-method.Rd
man/ms.image-class.Rd
man/msImage.Rd
man/msi.dataset-class.Rd
man/msiDataset.Rd
man/normIntensity-msi.dataset-method.Rd
man/numDetectedMSI-msi.dataset-method.Rd
man/ovarianDESIDoria2016.Rd
man/plot.Rd
man/refImageBinaryKmeans.Rd
man/refImageBinaryKmeansMulti.Rd
man/refImageBinaryOtsu.Rd
man/refImageBinarySVM.Rd
man/refImageContinuous.Rd
man/removeSmallObjects-ms.image-method.Rd
man/scatter.ratio.Rd
man/smoothImage-ms.image-method.Rd
man/spatial.chaos.Rd
man/splitPeaksFilter.Rd
man/totalIonCountMSI-msi.dataset-method.Rd
man/varTransform-msi.dataset-method.Rd
test_all.R
tests/test_constructors.R
tests/test_ext_data.R
tests/test_global_ref_filter.R
tests/test_pixel_count_filter.R
tutorials/workflow_desi.html
tutorials/workflow_maldi.html
