PCAImage-msi.dataset-method: Generates an RGB msImage representing the first 3 principal...
In paoloinglese/SPUTNIK: Spatially Automatic Denoising for Imaging Mass Spectrometry Toolkit
PCAImage,msi.dataset-method R Documentation
Generates an RGB msImage representing the first 3 principal components. This
image can be used to qualitatively evaluate the spatial heterogeneity of the
sample.
Description
Generates an RGB msImage representing the first 3 principal components. This
image can be used to qualitatively evaluate the spatial heterogeneity of the
sample.
Usage
## S4 method for signature 'msi.dataset'
PCAImage(object, alignToSample = TRUE, seed = NULL)
Arguments
object
msi.dataset-class object.
alignToSample
boolean (default = TRUE). If TRUE, the principal component
scores are aligned to the pixel mean intensity.
seed
set the random seed (default = NULL).
Value
RGB raster representing the first 3 principal components
(see msImage).
paoloinglese/SPUTNIK documentation built on April 18, 2024, 8:56 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| PCAImage,msi.dataset-method | R Documentation |
Generates an RGB msImage representing the first 3 principal components. This image can be used to qualitatively evaluate the spatial heterogeneity of the sample.
Description
Generates an RGB msImage representing the first 3 principal components. This image can be used to qualitatively evaluate the spatial heterogeneity of the sample.
Usage
## S4 method for signature 'msi.dataset'
PCAImage(object, alignToSample = TRUE, seed = NULL)
Arguments
object |
msi.dataset-class object. |
alignToSample |
boolean (default = TRUE). If TRUE, the principal component scores are aligned to the pixel mean intensity. |
seed |
set the random seed (default = |
Value
RGB raster representing the first 3 principal components (see msImage).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.