Man pages for parklab/SigMA
Signature Multivariate Analysis

assignmentAssigns a boolean based on a threshold on the likelihood or...
calc_llhCalculates likelihood of the genome with respect to the...
cosinecalculates cosine similarity between the spectrum and a set...
decomposeDecomposes the mutational spectrum of a genome in terms of...
lite_dfproduces a data.frame with fewer columns for easier use
make_matrixConverts somatic mutation call files in a directory either in...
match_to_catalogCalculates the compatibility of a list of genomes to an input...
plot_detailedGenerates a detailed plot per sample
plot_summaryGenerates summary plot
plot_tribase_distplots the 96 dimensional mutational spectrum
predict_mvaThis function uses the trained MVA, in particular gradient...
runRuns SigMA: (1) calculates likelihood, cosine similarity,...
parklab/SigMA documentation built on Aug. 30, 2019, 6:12 a.m.