API for parklab/SigMA
Signature Multivariate Analysis

Global functions
.convert_seq_to_vector Source code
.flip_base Source code
.flip_strand Source code
.make_matrix_from_custom_list Source code
.make_matrix_from_maf_list Source code
.make_matrix_from_vcf_list Source code
.make_type Source code
.make_vector_from_custom Source code
.make_vector_from_gr Source code
.make_vector_from_maf Source code
.make_vector_from_vcf Source code
add_gbm_model Source code
adjust_cutoff Source code
adjust_snvs Source code
assignment Man page Source code
calc_cos Source code
calc_llh Man page Source code
combine_SBS_indel Source code
conv_snv_matrix_to_df Source code
cosine Man page Source code
decompose Man page Source code
determine_scale Source code
find_data_setting Source code
get_base_matrix Source code
get_exps_mmrd Source code
get_inter_tt_suppl Source code
get_threshold Source code
get_trinuc_counts Source code
get_trinuc_norm Source code
has_model Source code
info_stat Source code
list_data_options Source code
list_tumor_types Source code
lite_df Man page Source code
make_matrix Man page Source code
match_to_catalog Man page Source code
overlap_repeats Source code
plot_detailed Man page Source code
plot_summary Man page Source code
plot_tribase_dist Man page Source code
predict_mmrd Source code
predict_mva Man page Source code
predict_prob Source code
quick_simulation Source code
remove_gbm_model Source code
run Man page Source code
run_overlap_repeats Source code
sen_fpr Source code
simulate_from_wgs Source code
subsample Source code
tune_gbm_model Source code
tune_new_gbm Source code
parklab/SigMA documentation built on Oct. 3, 2020, 9:04 a.m.