predict_mva: This function uses the trained MVA, in particular gradient...
In parklab/SigMA: Signature Multivariate Analysis

predict_mva

R Documentation

This function uses the trained MVA, in particular gradient boosting models, inside the package to assign a probability for the existence of the signature of interest.

Description

This function uses the trained MVA, in particular gradient boosting models, inside the package to assign a probability for the existence of the signature of interest.

Usage

predict_mva(input, signame, data, tumor_type = "breast", weight_cf)

Arguments

`input`	is a data frame that has likelihood cosine similarity and total snv values in it's columns
`signame`	name of the signature which is being identified
`data`	determines the sequencing platform see run()
`tumor_type`	tumor type tag see ?run