Files in pat-s/2019-feature-selection

Research Compendium package for the publication "Monitoring forest health using hyperspectral imagery: Does feature selection improve the performance of machine-learning techniques?"

LICENSE.md R/01-fun-download.R R/02-fun-data-preprocessing.R R/03-fun-hyperspectral.R R/04-fun-sentinel-processing.R R/05-mlr-project.R R/06-mlr-paper.R R/07-fun-visualization.R R/90-eda-funs.R R/99-utils.R R/FeatureSelection.R README.md _drake.R analysis/about.Rmd analysis/eda.Rmd analysis/eval-performance.Rmd analysis/feature-importance.Rmd analysis/filter-correlation.Rmd analysis/index.Rmd analysis/inspect-glmnet-models.Rmd analysis/license.Rmd analysis/report-defoliation.Rmd analysis/response-normality.Rmd analysis/spectral-signatures.Rmd analysis/test/cloud-cover.Rmd code/010-download.R code/020-hyperspectral-processing.R code/030-sentinel-processing.R code/040-data-preprocessing.R code/050-tasks.R code/060-modeling/paper/01-eda.R code/060-modeling/paper/02-param-sets.R code/060-modeling/paper/03-learner.R code/060-modeling/paper/04-filter-wrapper.R code/060-modeling/paper/05-resampling.R code/060-modeling/paper/06-tune-ctrl.R code/060-modeling/paper/07-tune-wrapper.R code/060-modeling/paper/08-train.R code/060-modeling/paper/09-feature-importance.R code/060-modeling/project/01-learner.R code/060-modeling/project/02-param-set.R code/060-modeling/project/03-resampling.R code/060-modeling/project/04-task.R code/060-modeling/project/05-train.R code/060-modeling/project/06-tune-ctrl.R code/060-modeling/project/07-tune.R code/070-benchmark-matrix.R code/080-aggregate.R code/090-reports.R code/099-packages.R code/README.md docs/00-manuscripts/ieee/jpg/create-img-grid.R docs/00-manuscripts/ieee/pdf/correlation-filter-nri-1.pdf docs/00-manuscripts/ieee/pdf/correlation-nbins-1.pdf docs/00-manuscripts/ieee/pdf/defoliation-distribution-plot-1.pdf docs/00-manuscripts/ieee/pdf/fi-hr-ale-1.pdf docs/00-manuscripts/ieee/pdf/fi-permut-vi-hr-1.pdf docs/00-manuscripts/ieee/pdf/fi-vi-ale-1.pdf docs/00-manuscripts/ieee/pdf/filter-effect-all-vs-borda-filter-1.pdf docs/00-manuscripts/ieee/pdf/filter-effect-all-vs-no-filter-1.pdf docs/00-manuscripts/ieee/pdf/pca-pov-comparison-1.pdf docs/00-manuscripts/ieee/pdf/performance-results-1.pdf docs/00-manuscripts/ieee/pdf/spectral-signatures-1.pdf docs/00-manuscripts/ieee/pdf/study-area-hyperspectral.pdf docs/00-manuscripts/ieee/preprint-2020-08-12.pdf docs/00-manuscripts/ieee/reviews/internal-reviews/ieee-manuscript-v1-26-03-2020-Alex-comments.pdf docs/00-manuscripts/ieee/reviews/internal-reviews/ieee-manuscript-v1-26-03-2020-Alex.pdf docs/00-manuscripts/ieee/reviews/internal-reviews/ieee-manuscript-v2-06-05-2020-Bernd.pdf docs/00-manuscripts/ieee/reviews/internal-reviews/ieee-manuscript-v3-Marie-grammar-reviewed.pdf docs/00-manuscripts/ieee/reviews/internal-reviews/ieee-manuscript-v3-Marie-grammar.pdf docs/00-manuscripts/ieee/reviews/internal-reviews/ieee-manuscript-v4.pdf docs/00-manuscripts/ieee/reviews/internal-reviews/ieee-manuscript-v4_AB.pdf docs/00-manuscripts/ieee/reviews/internal-reviews/ieee-manuscript-v5.pdf docs/00-manuscripts/ieee/reviews/review1/cover-letter-review1.md docs/00-manuscripts/ieee/reviews/review1/review1-resubmission-2.pdf docs/00-manuscripts/ieee/reviews/review1/review1-resubmission.pdf docs/00-manuscripts/ieee/reviews/review1/reviewer1.md docs/00-manuscripts/ieee/reviews/review1/reviewer2.md docs/00-manuscripts/ieee/reviews/review1/reviewer3.md docs/00-manuscripts/ieee/reviews/review1/reviewer4.md docs/00-manuscripts/ieee/reviews/review2/cover-letter-review2.md docs/00-manuscripts/ieee/reviews/review2/review2-resubmission.pdf docs/00-manuscripts/ieee/reviews/review2/reviewer1-reply.md docs/00-manuscripts/ieee/reviews/review2/reviewer2-reply.md docs/00-manuscripts/mdpi/Changelog.md docs/00-manuscripts/mdpi/Definitions/logo-updates.pdf docs/00-manuscripts/mdpi/jpg/create-img-grid.R docs/00-manuscripts/mdpi/manuscript.pdf docs/00-manuscripts/mdpi/pdf/correlation-filter-nri-1.pdf docs/00-manuscripts/mdpi/pdf/correlation-nbins-1.pdf 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docs/00-manuscripts/mdpi/submissions/final-submission/pdf/correlation-filter-nri-1.pdf docs/00-manuscripts/mdpi/submissions/final-submission/pdf/correlation-nbins-1.pdf docs/00-manuscripts/mdpi/submissions/final-submission/pdf/defoliation-distribution-plot-1.pdf docs/00-manuscripts/mdpi/submissions/final-submission/pdf/fi-hr-ale-1.pdf docs/00-manuscripts/mdpi/submissions/final-submission/pdf/fi-permut-vi-hr-1.pdf docs/00-manuscripts/mdpi/submissions/final-submission/pdf/fi-vi-ale-1.pdf docs/00-manuscripts/mdpi/submissions/final-submission/pdf/filter-effect-all-vs-borda-filter-1.pdf docs/00-manuscripts/mdpi/submissions/final-submission/pdf/filter-effect-all-vs-no-filter-1.pdf docs/00-manuscripts/mdpi/submissions/final-submission/pdf/pca-pov-comparison-1.pdf docs/00-manuscripts/mdpi/submissions/final-submission/pdf/performance-results-1.pdf docs/00-manuscripts/mdpi/submissions/final-submission/pdf/spectral-signatures-1.pdf 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docs/00-manuscripts/mdpi/submissions/proofreading-before-pub/pdf/filter-effect-all-vs-no-filter-1.pdf docs/00-manuscripts/mdpi/submissions/proofreading-before-pub/pdf/pca-pov-comparison-1.pdf docs/00-manuscripts/mdpi/submissions/proofreading-before-pub/pdf/performance-results-1.pdf docs/00-manuscripts/mdpi/submissions/proofreading-before-pub/pdf/spectral-signatures-1.pdf docs/00-manuscripts/mdpi/submissions/proofreading-before-pub/pdf/study-area-hyperspectral.pdf docs/00-manuscripts/mdpi/submissions/proofreading-before-pub/remotesensing-1398065 english editing done.pdf docs/00-manuscripts/mdpi/submissions/submission1/cover-letter.pdf docs/00-manuscripts/mdpi/submissions/submission1/submission-1.pdf docs/00-manuscripts/mdpi/submissions/submission1/submission-1/Definitions/logo-updates.pdf docs/00-manuscripts/mdpi/submissions/submission1/submission-1/jpg/create-img-grid.R docs/00-manuscripts/mdpi/submissions/submission1/submission-1/pdf/correlation-filter-nri-1.pdf docs/00-manuscripts/mdpi/submissions/submission1/submission-1/pdf/correlation-nbins-1.pdf docs/00-manuscripts/mdpi/submissions/submission1/submission-1/pdf/defoliation-distribution-plot-1.pdf docs/00-manuscripts/mdpi/submissions/submission1/submission-1/pdf/fi-hr-ale-1.pdf docs/00-manuscripts/mdpi/submissions/submission1/submission-1/pdf/fi-permut-vi-hr-1.pdf docs/00-manuscripts/mdpi/submissions/submission1/submission-1/pdf/fi-vi-ale-1.pdf docs/00-manuscripts/mdpi/submissions/submission1/submission-1/pdf/filter-effect-all-vs-borda-filter-1.pdf docs/00-manuscripts/mdpi/submissions/submission1/submission-1/pdf/filter-effect-all-vs-no-filter-1.pdf docs/00-manuscripts/mdpi/submissions/submission1/submission-1/pdf/pca-pov-comparison-1.pdf docs/00-manuscripts/mdpi/submissions/submission1/submission-1/pdf/performance-results-1.pdf docs/00-manuscripts/mdpi/submissions/submission1/submission-1/pdf/spectral-signatures-1.pdf docs/00-manuscripts/mdpi/submissions/submission1/submission-1/pdf/study-area-hyperspectral.pdf docs/00-manuscripts/mdpi/submissions/submission2/submission-2.pdf docs/00-manuscripts/mdpi/template.pdf docs/figure/eda.Rmd/defoliation-distribution-plot-1.pdf docs/figure/eda.Rmd/pca-pov-comparison-1.pdf docs/figure/eval-performance.Rmd/filter-effect-all-vs-borda-filter-1.pdf docs/figure/eval-performance.Rmd/filter-effect-all-vs-no-filter-1.pdf docs/figure/eval-performance.Rmd/performance-results-1.pdf docs/figure/feature-importance.Rmd/fi-hr-ale-1.pdf docs/figure/feature-importance.Rmd/fi-permut-hr-abs-1.pdf docs/figure/feature-importance.Rmd/fi-permut-vi-abs-1.pdf docs/figure/feature-importance.Rmd/fi-permut-vi-hr-1.pdf docs/figure/feature-importance.Rmd/fi-vi-ale-1.pdf docs/figure/filter-correlation.Rmd/correlation-filter-nri-1.pdf docs/figure/filter-correlation.Rmd/correlation-nbins-1.pdf docs/figure/spectral-signatures.Rmd/spectral-signatures-1.pdf inst/HS-filter-borda.R inst/README.md inst/xgboost_7vars_prediction.R man-roxygen/learner.R man-roxygen/measure.R man-roxygen/ncpus.R man-roxygen/param_set.R man-roxygen/resampling.R man-roxygen/task.R man-roxygen/url.R man/FeatureSelection-package.Rd man/calc_nri_indices.Rd man/calc_veg_indices.Rd man/calculate_vi.Rd man/copy_cloud.Rd man/create_defoliation_map.Rd man/create_prediction_df.Rd man/create_prediction_map.Rd man/data_preprocessing.Rd man/download.Rd man/download_images.Rd man/extra_to_plot.Rd man/extract_to_plot.Rd man/feature_imp_parallel.Rd man/file_cp_ts.Rd man/get_coordinates.Rd man/get_records.Rd man/inv_boxcox_rmse.Rd man/mask_mosaic.Rd man/mask_vi.Rd man/mosaic_clouds.Rd man/mosaic_images.Rd man/my_pairs.Rd man/predict_defoliation.Rd man/prediction_raster.Rd man/process_hyperspec.Rd man/ras_to_sf.Rd man/scale_defoliation.Rd man/stack_bands.Rd man/train_wrapper.Rd man/tune_ctrl_mbo_30n_70it.Rd man/tune_ctrl_wrapper.Rd man/tune_wrapper.Rd man/unzip_images.Rd renv/activate.R