Files in pbs-assess/gfiphc
Data Extraction and Analysis for Groundfish Data from the IPHC Longline Survey in BC
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/calc-iphc-ser-area.R
R/calc-iphc-ser.R
R/data.R
R/gfiphc.R
R/iphc-data.R
R/iphc-maps.R
R/plot-iphc.R
R/tidy-iphc-survey.R
R/utils-pipe.R
R/utils.R
README.md
data-raw/IPHC-stations-expanded.R
data-raw/IPHC_FISS_All_Stn_GFBio.csv
data-raw/IPHC_Stations_All.csv
data-raw/herring-predators-HG/herring-predators-HG-areas.R
data-raw/iphc-2020-data.Rmd
data-raw/iphc-2020-data.pdf
data-raw/iphc-2021-data.Rmd
data-raw/iphc-2021-data.pdf
data-raw/iphc-2022-data.Rmd
data-raw/iphc-2022-data.pdf
data-raw/iphc2013data.Rnw
data-raw/non-halibut-data-2020.csv
data-raw/non-halibut-data-2021.csv
data-raw/set-and-halibut-data-2020.csv
data-raw/set-and-halibut-data-2021.csv
data-raw/sets-skates-hooks-yelloweye.R
data/HG_herring_pred_area.rda
data/countData1995.rda
data/countData1995rs.rda
data/countData2013.rda
data/countData2020.rda
data/countData2021.rda
data/countData2022.rda
data/data1996to2002.rda
data/hooks_with_bait.rda
data/setData1995.rda
data/setData1995rs.rda
data/setData2013.rda
data/setData2020.rda
data/setData2021.rda
data/setData2022.rda
data/setDataExpansion.rda
data/sets_other_years.rda
data/skates_other_years.rda
data/yelloweye_rockfish.rda
gfiphc.Rproj
inst/extdata/iphc-spp-names.csv
inst/sql/get-iphc-first-20-hooks-per-skate.sql
inst/sql/get-iphc-hook-level-bait-on-hook.sql
inst/sql/get-iphc-hook-level.sql
inst/sql/get-iphc-set-info.sql
inst/sql/get-iphc-set-level.sql
inst/sql/get-iphc-skate-info.sql
man/HG_herring_pred_area.Rd
man/add_in_area.Rd
man/add_stations.Rd
man/boot_iphc.Rd
man/calc_iphc_full_res.Rd
man/calc_iphc_ser_AB.Rd
man/calc_iphc_ser_EF.Rd
man/calc_iphc_ser_E_and_F.Rd
man/calc_iphc_ser_all.Rd
man/compare_iphc_ser_A_D.Rd
man/compare_iphc_ser_B_C.Rd
man/countData1995.Rd
man/countData1995rs.Rd
man/countData2013.Rd
man/countData2020.Rd
man/countData2021.Rd
man/data1996to2002.Rd
man/format_iphc_longest.Rd
man/get_all_iphc_set_counts.Rd
man/get_combined_species.Rd
man/get_early_iphc.Rd
man/gfiphc.Rd
man/hooks_with_bait.Rd
man/iphc-spp-names.csv.Rd
man/iphc_data.Rd
man/iphc_format_for_EAFM.Rd
man/iphc_get_calc_plot_area.Rd
man/iphc_get_calc_plot_full.Rd
man/iphc_get_calc_plot_orig.Rd
man/pipe.Rd
man/plot_BC.Rd
man/plot_IPHC_ser_ABCD.Rd
man/plot_IPHC_ser_E_and_F.Rd
man/plot_IPHC_ser_four_panels.Rd
man/plot_IPHC_ser_four_panels_ABCD.Rd
man/plot_iphc_index.Rd
man/plot_iphc_map.Rd
man/plot_iphc_map_panel.Rd
man/setData1995.Rd
man/setData1995rs.Rd
man/setData2013.Rd
man/setData2020.Rd
man/setData2021.Rd
man/setDataExpansion.Rd
man/sets_other_years.Rd
man/simple_cap.Rd
man/skates_other_years.Rd
man/sp_hyphenate.Rd
man/tidy_iphc_survey.Rd
man/yelloweye_rockfish.Rd
vignettes/analysis_for_HG_herring_predators.Rmd
vignettes/analysis_for_HG_herring_predators.html
vignettes/analysis_for_restricted_area.Rmd
vignettes/analysis_for_restricted_area.html
vignettes/data_for_all_species.Rmd
vignettes/data_for_all_species.html
vignettes/data_for_one_species.Rmd
vignettes/data_for_one_species.html
vignettes/data_for_one_species_sixgill.Rmd
vignettes/which_species_occur.Rmd
