plot_IPHC_ser_ABCD: Single plotting function for Series A, B, C, D, or...

In pbs-assess/gfiphc: Data Extraction and Analysis for Groundfish Data from the IPHC Longline Survey in BC

Single plotting function for Series A, B, C, D, or combination of two

Description

Plotting series.

Usage

plot_IPHC_ser_ABCD(
  series_ABCD_full,
  plot_type = "AB",
  x_lim = c(1995, 2022),
  y_lim = NULL,
  shift = 0.15,
  tck_length = -0.02,
  ser_A_col = "blue",
  ser_B_col = "red",
  ser_C_col = "orange",
  ser_D_col = "darkgreen",
  legend_text = NULL,
  x_lab = "Year",
  y_lab = "Catch rate index (numbers per effective skate)",
  gap_ci = 0.5,
  ...
)

Arguments

series_ABCD_full	list containing tibbles for ser_longest etc., an output from calc_iphc_full_res
plot_type	one of X, where X is A, B, C, or D, to plot just Series X X_Y_scaled to plot Series X and Y each scaled by their geometric mean of the overlapping years (no scaling if no overlapping years), where X and Y are A, B, C, or D. XY to plot Series XY (with X rescaled in red), empty plot if longest series is just X or Y - TODO - maybe. where X and Y are A, B, C, or D.
x_lim	x limits
y_lim	y limits
shift	if plotting two then shift Series X to left and Y to right by shift amount
tck_length	small tickmark lengths
ser_A_col	colour for Series A
ser_B_col	colour for Series B
ser_C_col	colour for Series C
ser_D_col	colour for Series D
legend_text	text to override default if desired
x_lab	x label to override default if desired
y_lab	y label to override default if desired
gap_ci	gap (units of 'height of letter O') between cirlce and whiskers for confidence intervals
...	further arguments to gplots::plotCI

Value

Single plot for Series A, B, C, D, or combination of two

Author(s)

Andrew Edwards

Examples

## Not run: 
# See vignettes.

## End(Not run)

pbs-assess/gfiphc documentation built on July 4, 2023, 1:13 p.m.