plot_iphc_index: These next two functions are originally from gfsynopsis, but...

In pbs-assess/gfiphc: Data Extraction and Analysis for Groundfish Data from the IPHC Longline Survey in BC

These next two functions are originally from gfsynopsis, but now that uses the same approach to plot all surveys (nothing special about iphc); the IPHC results are wrangled into the same format as for the others surveys. So these two functions are somewhat redundant, but leaving here in case someone wants to create the gfsynopsis-style plots for just IPHC data, by uncommenting the iphc_plot part of plot_iphc_index(). Note this would then require gfplot (which requires many more packages). So maybe adapt the function below outside of gfiphc, to keep dependencies down for gfiphc (thank you!). Plot just the IPHC survey index, though works for all surveys - WON'T CURRENTLY WORK as commenting out reference to gfplot, need to move that function here but want to test first. Moving to gfsynopsis or gfplot.

Description

Plot just the IPHC survey index (mainly for testing).

Usage

plot_iphc_index(iphc_set_counts_sp_format)

Arguments

iphc_set_counts_sp_format

Set counts for a given species formatted in the same way as the other survey series, using format_iphc_longest()

Value

ggplot object of the plot

pbs-assess/gfiphc documentation built on July 4, 2023, 1:13 p.m.