calc_iphc_full_res: Do all the calculations for the IPHC survey.

In pbs-assess/gfiphc: Data Extraction and Analysis for Groundfish Data from the IPHC Longline Survey in BC

Do all the calculations for the IPHC survey.

Description

From species-specific set-level counts, derive all the required Series and test their equivalence.

Usage

calc_iphc_full_res(set_counts)

Arguments

set_counts

species-specific set-level counts from tidy_iphc_survey() or other.

Value

List containing

ser_longest: tibble for the longest time series that can be made for this species, as output from calc_iphc_ser_AB(); either Series A or AB. Or Series B if a species is never caught when only the first 20 hooks are enumerated (1997-2002 or 2013) but is caught when all hooks are enumerated - then Series AB is just Series A but only includes years that are in Series B, so we may as well use Series B (all hooks). May need to think a little more. Just need results of test_BC to be mentioned later. full_coast: whether or not the longest time series can be considered representative of the full coast (based on the paired t-tests).

ser_all: Series A, B, C and D, as output from calc_iphc_ser_all().

test_AB: t-test results from calc_iphc_ser_AB()

test_AD: t-test results from compare_iphc_ser_A_D()

test_BC: t-test results from compare_iphc_ser_B_C()

If no observations at all for the species then return NULL.

pbs-assess/gfiphc documentation built on July 4, 2023, 1:13 p.m.