| add_in_area | Take set count data for a species and add column indicating... |
| add_stations | Add individual stations to map |
| boot_iphc | Do bootstrap calculations on each IPHC Series |
| calc_iphc_full_res | Do all the calculations for the IPHC survey. |
| calc_iphc_ser_AB | Calculate Series AB and test if the scaled A and B are... |
| calc_iphc_ser_all | Calculate Series A, B, C and D from the IPHC data |
| calc_iphc_ser_E_and_F | Calculations restricted to a user-defined area. |
| calc_iphc_ser_EF | Calculate Series EF and test if the scaled E and F are... |
| compare_iphc_ser_A_D | Compare Series A and D to see if A can be considered a... |
| compare_iphc_ser_B_C | Compare Series B and C to see if A can be considered a... |
| countData1995 | Count data for 1995 IPHC survey |
| countData1995rs | Count data for 1995 IPHC survey for RS stations |
| countData2013 | Count data for 2013 IPHC survey |
| countData2020 | Count data for 2020 IPHC survey |
| countData2021 | Count data for 2021 and 2022 IPHC survey (following 2020... |
| data1996to2002 | Set-by-set level data (with species counts) from 1996 to... |
| format_iphc_longest | Format the longest IPHC time series index to agree with other... |
| get_all_iphc_set_counts | Get and combine all the IPHC survey data for a given species |
| get_combined_species | Get combined catch counts for a set of species |
| get_early_iphc | Get early IPHC data from already-saved .rds files (can likely... |
| gfiphc | gfiphc package |
| HG_herring_pred_area | Area considered for predators of Haida Gwaii Pacific Herring |
| hooks_with_bait | Available counts of hooks returned with bait on them, for... |
| iphc_data | Get IPHC data |
| iphc_format_for_EAFM | Format results from multiple species for Jennifer's EAFM HG... |
| iphc_get_calc_plot_area | Get data, do calculations and plot longest series for the... |
| iphc_get_calc_plot_full | Get data, do calculations and plot Series A, B and longest... |
| iphc_get_calc_plot_orig | Get data, do calculations and plot longest series for the... |
| iphc-spp-names.csv | Conversion from GFbio names to IPHC species names (for data... |
| pipe | Pipe operator |
| plot_BC | Map for BC coast, adapted from an example in Rowan Haigh's... |
| plot_iphc_index | These next two functions are originally from gfsynopsis, but... |
| plot_iphc_map | Plot the locations of the IPHC stations for a given year,... |
| plot_iphc_map_panel | Plot a panel of maps |
| plot_IPHC_ser_ABCD | Single plotting function for Series A, B, C, D, or... |
| plot_IPHC_ser_E_and_F | Plotting functions for gfiphc. The E and F ones were actually... |
| plot_IPHC_ser_four_panels | Wrapper to plot all four versions of Series E and F plots in... |
| plot_IPHC_ser_four_panels_ABCD | Wrapper to plot four versions of Series A-D plots in one... |
| setData1995 | Station data for 1995 IPHC survey |
| setData1995rs | Station data for 1995 IPHC survey for RS stations |
| setData2013 | Station data for 2013 IPHC survey |
| setData2020 | Station data for 2020 IPHC survey |
| setData2021 | Station data for 2021 and 2022 IPHC surveys (following 2020... |
| setDataExpansion | Data indicating which stations are the 2018 (and maybe later)... |
| sets_other_years | Details of sets for data extracted from GFBio |
| simple_cap | Capitalise first letters of words (from ?toupper) |
| skates_other_years | Details of skates for data extracted from GFBio |
| sp_hyphenate | Hyphenate or underscore species name. |
| tidy_iphc_survey | Tidy IPHC survey data |
| yelloweye_rockfish | Available counts of Yelloweye Rockfish, for each set for all... |
