findClosestCOSMIC30: Find closest COSMIC30 signatures
In pdiakumis/hrdetect: Signature Tools
Description
Usage
Arguments
Value
View source: R/signatures_utils.R
Description
Compares a set of signatures to the COSMIC30 signatures and
returns the list of signatures identified. For example,
c("C1","C3","N1","C13","N2") means that Cosmic (C) signatures 1, 3 and 13 were found, while
signatures N1 and N2 are unknown signatures (N for not found), based on a similarity threshold (similarity >=threshold)
comparing to COSMIC30
Usage
1
findClosestCOSMIC30(sigs, threshold)
Arguments
sigs
matrix with 96-channel substitution signatures as columns
threshold
cosine similarity threshold
Value
the list of signatures identified
pdiakumis/hrdetect documentation built on May 17, 2020, 5:30 p.m.
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Description Usage Arguments Value
View source: R/signatures_utils.R
Description
Compares a set of signatures to the COSMIC30 signatures and returns the list of signatures identified. For example, c("C1","C3","N1","C13","N2") means that Cosmic (C) signatures 1, 3 and 13 were found, while signatures N1 and N2 are unknown signatures (N for not found), based on a similarity threshold (similarity >=threshold) comparing to COSMIC30
Usage
1 | findClosestCOSMIC30(sigs, threshold)
|
Arguments
sigs |
matrix with 96-channel substitution signatures as columns |
threshold |
cosine similarity threshold |
Value
the list of signatures identified
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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