plotRearrSignatures: Plot Rearrangement Signatures or Catalogues

In pdiakumis/hrdetect: Signature Tools

Description

Function to plot one or more rearrangement signatures or catalogues.

Usage

plotRearrSignatures(
  signature_data_matrix,
  output_file = NULL,
  plot_sum = TRUE,
  overall_title = "",
  add_to_titles = NULL,
  mar = NULL
)

Arguments

signature_data_matrix	matrix of signatures, signatures as columns and channels as rows
output_file	set output file, should end with ".jpg". If output_file==null, output will not be to a file, but will still run the plot functions. The option output_file==null can be used to add this plot to a larger output file.
plot_sum	whether the sum of the channels should be plotted. If plotting signatures this should be FALSE, but if plotting sample catalogues, this can be set to TRUE to display the number of mutations in each sample.
overall_title	set the overall title of the plot
mar	set the option par(mar=mar)

pdiakumis/hrdetect documentation built on May 17, 2020, 5:30 p.m.