Man pages for pedrostrusso/annotator
Automatic annotation of GEO studies
| annotate | Annotate GEO samples |
| annotate_gse | Download and annotate a GSE study based on GSE number |
| calculate_distance | Calculate distance |
| get_fnr | Calculate false negative rate between two clustering methods |
| get_fpr | Calculate false positive rate between two clustering methods |
| get_info_table | Get information table |
| get_rand | Get Rand index of annotated samples |
| get_tpr | Calculate true positive rate between two clustering methods |
| hdbscan2 | Calculate HDBSCAN algorithm |
| kNNdist2 | Calculate k-Nearest Neighbors Distance |
| label_annot | Automatic label creation |
| loop_studies | Loop over studies and annotate sample classes |
| monge_elkan | Monge-Elkan string similarity |
| monge_elkan_matrix | Monge-Elkan string similarity matrix (w/ Jaro-Winkler... |
| nw_matrix | Needleman-Wunsch string similarity matrix |
| nw_metric | Needleman-Wunsch string similarity |
| sw_matrix | Smith-Waterman similarity matrix |
| sw_metric | Smith-Waterman similarity metric |
