annotate: Annotate GEO samples

In pedrostrusso/annotator: Automatic annotation of GEO studies

Description

Annotate GEO samples

Usage

annotate(annot, method = c("jw", "jaro", "sw", "nw", "me", "lv", "dl",
  "osa", "lcs", "qgram", "cosine", "jaccard"), label_method = "all",
  p = 0, ...)

Arguments

annot	A data.frame object containing sample annotation values
method	String similarity measure to be used. One of "jw", "jaro", "sw", "nw", "me", "lv", "dl", "osa", "lcs", "qgram", "cosine", "jaccard"
label_method	Labelling method to be used. One of "all", "common", "unique", "lcsubstr", "lcsubseq".
p	Penalty factor for Jaro-Winkler distance. If p=0 (default), the Jaro distance is returned.
...	Additional arguments to the distance functions

pedrostrusso/annotator documentation built on June 12, 2019, 11:23 a.m.